Non-Coding RNA Search

Ss1.1-rpty605b_k24.5

Sequence:


               
               CCCCTAACAGGCTTTTATACTCCAGTGGTGGGTCTCTTTAATTGCTTAGATATGACTTCA
TAGCCCTAGGTAAGGTAAGATCTGGGCAAACAATTGAATATTCTTGGTCTTCCATTGTAA
AAACACAAGGCCAAGGTCAAAGTTCATGTCTTGGAAAATTCGTGAAATCTTAACTTGAAC
TTAACTTTGGGTTCAGCTTCACACGTTAAGTCATGTCTGACCTGATGTTAGCTGTAATCT
ATTTTGAGCTTTAAGAATAGTTGTTGTTGCTTGGGTTCCGAATGTATGAGAAAACTCTTC
TGTTTATATGTAGTGCTAATTTAGGTTATTTTAAATCCATGATTAATTTACATTCCCTTT
TAAAATTATAGTTTAATTGCTGAAAGAGATTTATTTTTGTTATACTAAACTATGGAAATT
TTTTTCATAGAATTTTTTTCAAGTTTATTTTTTGTGTGCTTCATTTGGAACCATTTTTGT
TTATATACATTGTATGTGCCCAAAATAATAGTTTTTTTAAAATTCAGTAAGAGACTTAAA
ATTTACAGTATAACTGTTGTAATCTTTGTGTGTTAATTTTCACTTTACATTTTAAATGCC
AGACTTTACAAAAATAGCTGATCTTTATTAATTGCATCCTAATTAGAAATGTTTGTTCTC
CTCCATGTCTTCAACCTTATAAATAAGTTTTTATTTTAATATGCTTAAAGAAAAAACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTAACAGGCTTTTATACTCCAGTGGTGGGTCTCTTTAATTGCTTAGATATGACTTCA
TAGCCCTAGGTAAGGTAAGATCTGGGCAAACAATTGAATATTCTTGGTCTTCCATTGTAA
AAACACAAGGCCAAGGTCAAAGTTCATGTCTTGGAAAATTCGTGAAATCTTAACTTGAAC
TTAACTTTGGGTTCAGCTTCACACGTTAAGTCATGTCTGACCTGATGTTAGCTGTAATCT
ATTTTGAGCTTTAAGAATAGTTGTTGTTGCTTGGGTTCCGAATGTATGAGAAAACTCTTC
TGTTTATATGTAGTGCTAATTTAGGTTATTTTAAATCCATGATTAATTTACATTCCCTTT
TAAAATTATAGTTTAATTGCTGAAAGAGATTTATTTTTGTTATACTAAACTATGGAAATT
TTTTTCATAGAATTTTTTTCAAGTTTATTTTTTGTGTGCTTCATTTGGAACCATTTTTGT
TTATATACATTGTATGTGCCCAAAATAATAGTTTTTTTAAAATTCAGTAAGAGACTTAAA
ATTTACAGTATAACTGTTGTAATCTTTGTGTGTTAATTTTCACTTTACATTTTAAATGCC
AGACTTTACAAAAATAGCTGATCTTTATTAATTGCATCCTAATTAGAAATGTTTGTTCTC
CTCCATGTCTTCAACCTTATAAATAAGTTTTTATTTTAATATGCTTAAAGAAAAAACTCC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               62-714, gnl|bosTau2|chrX (37706503-37705868)
               

               
               62-714, gnl|canFam2|chrX (19569896-19571205)
               

               
               62-714, gnl|echTel1|scaffold_274518 (7337-8671)
               

               
               62-714, gnl|hg17|chrX (23762457-23763721)
               

               
               62-714, gnl|Hg17|chrX (23763452-23762847)
               

               
               62-714, gnl|loxAfr1|scaffold_1497 (67932-66673)
               

               
               62-714, gnl|mm7|chrX (89663356-89662125)
               

               
               62-714, gnl|Mm7|chrX (89662377-89662971)
               

               
               62-714, gnl|monDom2|scaffold_48 (7976604-7975264)
               

               
               62-714, gnl|oryCun1|scaffold_132095 (9001-7729)
               

               
               62-714, gnl|panTro1|chrX (24596902-24598169)
               

               
               62-714, gnl|rheMac2|chrX (21795073-21796344)
               

               
               62-714, gnl|rn3|chrX (81756390-81755147)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-714, gnl|bosTau2|chrX (37706503-37705868)
               

               
               62-714, gnl|canFam2|chrX (19569896-19571205)
               

               
               62-714, gnl|echTel1|scaffold_274518 (7337-8671)
               

               
               62-714, gnl|hg17|chrX (23762457-23763721)
               

               
               62-714, gnl|Hg17|chrX (23763452-23762847)
               

               
               62-714, gnl|loxAfr1|scaffold_1497 (67932-66673)
               

               
               62-714, gnl|mm7|chrX (89663356-89662125)
               

               
               62-714, gnl|Mm7|chrX (89662377-89662971)
               

               
               62-714, gnl|monDom2|scaffold_48 (7976604-7975264)
               

               
               62-714, gnl|oryCun1|scaffold_132095 (9001-7729)
               

               
               62-714, gnl|panTro1|chrX (24596902-24598169)
               

               
               62-714, gnl|rheMac2|chrX (21795073-21796344)
               

               
               62-714, gnl|rn3|chrX (81756390-81755147)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pty (0.142714)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	62-714, gnl\|bosTau2\|chrX (37706503-37705868)
	62-714, gnl\|canFam2\|chrX (19569896-19571205)
	62-714, gnl\|echTel1\|scaffold_274518 (7337-8671)
	62-714, gnl\|hg17\|chrX (23762457-23763721)
	62-714, gnl\|Hg17\|chrX (23763452-23762847)
	62-714, gnl\|loxAfr1\|scaffold_1497 (67932-66673)
	62-714, gnl\|mm7\|chrX (89663356-89662125)
	62-714, gnl\|Mm7\|chrX (89662377-89662971)
	62-714, gnl\|monDom2\|scaffold_48 (7976604-7975264)
	62-714, gnl\|oryCun1\|scaffold_132095 (9001-7729)
	62-714, gnl\|panTro1\|chrX (24596902-24598169)
	62-714, gnl\|rheMac2\|chrX (21795073-21796344)
	62-714, gnl\|rn3\|chrX (81756390-81755147)