Ss1.1-rpty619b_a1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGCCGTCGCTGTTGCTGTCCTCCTGGCCTGGGTTGGGGACCAGCCGGCAATTGTCCGG TCCAGGGGGCACTAGGTCTGGGATGCCGTCATTGTCATCGTCATCATCACACTCGTCGCC AATTCCATCCTTGTCAGTGTCCAGCTGGGCACTGTTAATGACAGTGGGGCAGTTGTCCGT GCTGTCCTGGTGCCCGTCTCCGTCACTGTCCTGATTGGTGTCACAGGAGTCCCCAACCAG ATCATTATCCACGTCAGACTGGTTAGGGTTGCTGACATCAGGACAACTGTCACAGGCATC CCCCACGCCATCACCATCCCGGTCTTGCTGGTTACGATTGGCAACTTTGGGGCAGTTGTC CAGGATGTTTTTTATTCCATCTCCATCCATGTCATCGTCGCAGGCATCTCCTTTTCCATC CCCATCAGTGTCTCTCTGGTCATTATTTAGGACATTCCGGCAGTTATCACAGGCATCTCC ATAGATATCTTTGTCACTGTTCCTCTGATCCATGTTGTGGGTCAGGACACAGTTATCCTG CTCATTCAGGATCCCATCTCCATCAGCATCCTCGTCACAAGCATCTCCGATGCCATCTCT GTCTGCATCTTCTTGGCCAGAATTTGGCACGTACTTGCAGTTGTCTTTTTTGCAGTTTCT GGCAGAGCACGGCAGTTCTTCGTCTGGGTAACTGTCGATGTCCACGTCTTTTCCACAGAT CTAGCCATCACCAGCCCAGCCGACCCCACACACGCACGTCACATCCCCCTGCCTCTCTTC GATACACTGCGCGTTCACACTGCAAGGGTTCAGCTCTGGATTTCTGCAGTTTCTCTCCAT TTTGCAGCCCCTCATCTGATCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGCCGTCGCTGTTGCTGTCCTCCTGGCCTGGGTTGGGGACCAGCCGGCAATTGTCCGG TCCAGGGGGCACTAGGTCTGGGATGCCGTCATTGTCATCGTCATCATCACACTCGTCGCC AATTCCATCCTTGTCAGTGTCCAGCTGGGCACTGTTAATGACAGTGGGGCAGTTGTCCGT GCTGTCCTGGTGCCCGTCTCCGTCACTGTCCTGATTGGTGTCACAGGAGTCCCCAACCAG ATCATTATCCACGTCAGACTGGTTAGGGTTGCTGACATCAGGACAACTGTCACAGGCATC CCCCACGCCATCACCATCCCGGTCTTGCTGGTTACGATTGGCAACTTTGGGGCAGTTGTC CAGGATGTTTTTTATTCCATCTCCATCCATGTCATCGTCGCAGGCATCTCCTTTTCCATC CCCATCAGTGTCTCTCTGGTCATTATTTAGGACATTCCGGCAGTTATCACAGGCATCTCC ATAGATATCTTTGTCACTGTTCCTCTGATCCATGTTGTGGGTCAGGACACAGTTATCCTG CTCATTCAGGATCCCATCTCCATCAGCATCCTCGTCACAAGCATCTCCGATGCCATCTCT GTCTGCATCTTCTTGGCCAGAATTTGGCACGTACTTGCAGTTGTCTTTTTTGCAGTTTCT GGCAGAGCACGGCAGTTCTTCGTCTGGGTAACTGTCGATGTCCACGTCTTTTCCACAGAT CTAGCCATCACCAGCCCAGCCGACCCCACACACGCACGTCACATCCCCCTGCCTCTCTTC GATACACTGCGCGTTCACACTGCAAGGGTTCAGCTCTGGATTTCTGCAGTTTCTCTCCAT TTTGCAGCCCCTCATCTGATCCCC |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 11-209, gnl|bosTau2|chr10 (5025690-5025888) | |
| 11-209, gnl|Hg17|chr5 (79408628-79408430) | |
| 11-209, gnl|Mm7|chr13 (89820315-89820513) | |
| 377-539, gnl|bosTau2|chr10 (5031245-5031407) | |
| 377-539, gnl|canFam2|chr3 (29839118-29838937) | |
| 377-539, gnl|danRer3|chr5 (57154976-57154795) | |
| 377-539, gnl|dasNov1|scaffold_127166 (931-762) | |
| 377-539, gnl|echTel1|scaffold_317528 (89726-89907) | |
| 377-539, gnl|fr1|chrUn (92122259-92122084) | |
| 377-539, gnl|galGal2|chrZ (5252411-5252227) | |
| 377-539, gnl|hg17|chr5 (79402593-79402774) | |
| 377-539, gnl|Hg17|chr5 (79402760-79402598) | |
| 377-539, gnl|loxAfr1|scaffold_9198 (18259-18077) | |
| 377-539, gnl|mm7|chr13 (89825322-89825141) | |
| 377-539, gnl|Mm7|chr13 (89825153-89825315) | |
| 377-539, gnl|monDom2|scaffold_27 (35803272-35803091) | |
| 377-539, gnl|oryCun1|scaffold_173728 (59607-59782) | |
| 377-539, gnl|panTro1|chr4 (35784075-35783894) | |
| 377-539, gnl|rheMac2|chr6 (76275353-76275534) | |
| 377-539, gnl|rn3|chr2 (22942691-22942510) | |
| 377-539, gnl|tetNig1|chr4 (3925062-3925233) | |
| 377-539, gnl|xenTro1|scaffold_183 (1246727-1246546) | |
| 751-864, gnl|bosTau2|chr10 (5035565-5035678) | |
| 751-864, gnl|canFam2|chr3 (29843381-29843193) | |
| 751-864, gnl|danRer3|chr5 (57159758-57159567) | |
| 751-864, gnl|dasNov1|scaffold_73 (21465-21277) | |
| 751-864, gnl|echTel1|scaffold_317528 (85434-85622) | |
| 751-864, gnl|fr1|chrUn (181118299-181118130) | |
| 751-864, gnl|galGal2|chrZ (5255371-5255193) | |
| 751-864, gnl|hg17|chr5 (79399524-79399712) | |
| 751-864, gnl|Hg17|chr5 (79399704-79399591) | |
| 751-864, gnl|loxAfr1|scaffold_9198 (21724-21536) | |
| 751-864, gnl|mm7|chr13 (89829729-89829542) | |
| 751-864, gnl|Mm7|chr13 (89829548-89829661) | |
| 751-864, gnl|monDom2|scaffold_27 (35808997-35808806) | |
| 751-864, gnl|oryCun1|scaffold_173728 (56578-56746) | |
| 751-864, gnl|panTro1|chr4 (35787150-35786962) | |
| 751-864, gnl|rheMac2|chr6 (76272386-76272574) | |
| 751-864, gnl|rn3|chr2 (22947174-22946987) | |
| 751-864, gnl|tetNig1|chr4 (3924427-3924606) | |
| 751-864, gnl|xenTro1|scaffold_183 (1249207-1249022) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-209, gnl|bosTau2|chr10 (5025690-5025888) | |
| 11-209, gnl|Hg17|chr5 (79408628-79408430) | |
| 11-209, gnl|Mm7|chr13 (89820315-89820513) | |
| 377-539, gnl|bosTau2|chr10 (5031245-5031407) | |
| 377-539, gnl|canFam2|chr3 (29839118-29838937) | |
| 377-539, gnl|danRer3|chr5 (57154976-57154795) | |
| 377-539, gnl|dasNov1|scaffold_127166 (931-762) | |
| 377-539, gnl|echTel1|scaffold_317528 (89726-89907) | |
| 377-539, gnl|fr1|chrUn (92122259-92122084) | |
| 377-539, gnl|galGal2|chrZ (5252411-5252227) | |
| 377-539, gnl|hg17|chr5 (79402593-79402774) | |
| 377-539, gnl|Hg17|chr5 (79402760-79402598) | |
| 377-539, gnl|loxAfr1|scaffold_9198 (18259-18077) | |
| 377-539, gnl|mm7|chr13 (89825322-89825141) | |
| 377-539, gnl|Mm7|chr13 (89825153-89825315) | |
| 377-539, gnl|monDom2|scaffold_27 (35803272-35803091) | |
| 377-539, gnl|oryCun1|scaffold_173728 (59607-59782) | |
| 377-539, gnl|panTro1|chr4 (35784075-35783894) | |
| 377-539, gnl|rheMac2|chr6 (76275353-76275534) | |
| 377-539, gnl|rn3|chr2 (22942691-22942510) | |
| 377-539, gnl|tetNig1|chr4 (3925062-3925233) | |
| 377-539, gnl|xenTro1|scaffold_183 (1246727-1246546) | |
| 751-864, gnl|bosTau2|chr10 (5035565-5035678) | |
| 751-864, gnl|canFam2|chr3 (29843381-29843193) | |
| 751-864, gnl|danRer3|chr5 (57159758-57159567) | |
| 751-864, gnl|dasNov1|scaffold_73 (21465-21277) | |
| 751-864, gnl|echTel1|scaffold_317528 (85434-85622) | |
| 751-864, gnl|fr1|chrUn (181118299-181118130) | |
| 751-864, gnl|galGal2|chrZ (5255371-5255193) | |
| 751-864, gnl|hg17|chr5 (79399524-79399712) | |
| 751-864, gnl|Hg17|chr5 (79399704-79399591) | |
| 751-864, gnl|loxAfr1|scaffold_9198 (21724-21536) | |
| 751-864, gnl|mm7|chr13 (89829729-89829542) | |
| 751-864, gnl|Mm7|chr13 (89829548-89829661) | |
| 751-864, gnl|monDom2|scaffold_27 (35808997-35808806) | |
| 751-864, gnl|oryCun1|scaffold_173728 (56578-56746) | |
| 751-864, gnl|panTro1|chr4 (35787150-35786962) | |
| 751-864, gnl|rheMac2|chr6 (76272386-76272574) | |
| 751-864, gnl|rn3|chr2 (22947174-22946987) | |
| 751-864, gnl|tetNig1|chr4 (3924427-3924606) | |
| 751-864, gnl|xenTro1|scaffold_183 (1249207-1249022) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pty (0.142714) | |
| eru (0.120048) |