Non-Coding RNA Search

Ss1.1-rpty619b_p4.5

Sequence:


               
               GCCACGCCAAACCGCCGCACCGAGGCGGTGGGGAGCCCCGCGGCGGCCGGCAGCACCACC
CGCCGTACCACCAGCAGCACCACCAAGGGCCACCACCGGGCGGGCCCGGCGGCCGCAGTG
AGGAAAAGATCTCGGACTCGGAGGGTTTTAAAGCCAACTTGTCTCTCTTGAGGAGGCCTG
GAGAGAAAACTTATACCCAACGTTGTCGGTTGTTTGTTGGGAATCTACCTGCTGATATCA
CAGAGGATGAATTTAAAAGACTATTTGCTAAATATGGAGAACCGGGAGAAGTTTTCATCA
ACAAAGGGAAAGGATTCGGATTTATTAAGCTTGAATCTAGAGCTTTGGCTGAAATTGCTA
AAGCTGAACTTGATGATACACCGATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACAC
ATGCTGCTGCCCTTTCTGTTCGAAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGCCAAACCGCCGCACCGAGGCGGTGGGGAGCCCCGCGGCGGCCGGCAGCACCACC
CGCCGTACCACCAGCAGCACCACCAAGGGCCACCACCGGGCGGGCCCGGCGGCCGCAGTG
AGGAAAAGATCTCGGACTCGGAGGGTTTTAAAGCCAACTTGTCTCTCTTGAGGAGGCCTG
GAGAGAAAACTTATACCCAACGTTGTCGGTTGTTTGTTGGGAATCTACCTGCTGATATCA
CAGAGGATGAATTTAAAAGACTATTTGCTAAATATGGAGAACCGGGAGAAGTTTTCATCA
ACAAAGGGAAAGGATTCGGATTTATTAAGCTTGAATCTAGAGCTTTGGCTGAAATTGCTA
AAGCTGAACTTGATGATACACCGATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACAC
ATGCTGCTGCCCTTTCTGTTCGAAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828419|ref|XP_583178.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828419|ref|XP_583178.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-144, gnl|bosTau2|chr3 (77669386-77669529)
               

               
               1-144, gnl|Hg17|chr1 (35327058-35326915)
               

               
               1-144, gnl|Mm7|chr4 (126466725-126466868)
               


               
               168-478, gnl|bosTau2|chr23 (25527949-25527643)
               

               
               168-478, gnl|Hg17|chr16 (68349171-68348861)
               

               
               168-478, gnl|Mm7|chrX (75921623-75921313)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr3 (77669386-77669529)
               

               
               1-144, gnl|Hg17|chr1 (35327058-35326915)
               

               
               1-144, gnl|Mm7|chr4 (126466725-126466868)
               


               
               168-478, gnl|bosTau2|chr23 (25527949-25527643)
               

               
               168-478, gnl|Hg17|chr16 (68349171-68348861)
               

               
               168-478, gnl|Mm7|chrX (75921623-75921313)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	1-144, gnl\|bosTau2\|chr3 (77669386-77669529)
	1-144, gnl\|Hg17\|chr1 (35327058-35326915)
	1-144, gnl\|Mm7\|chr4 (126466725-126466868)

	168-478, gnl\|bosTau2\|chr23 (25527949-25527643)
	168-478, gnl\|Hg17\|chr16 (68349171-68348861)
	168-478, gnl\|Mm7\|chrX (75921623-75921313)

	pty (0.142714)
	lnt (0.142308)
	nmm (0.132802)
	ova (0.129132)
	ecc (0.115035)
	cbl (0.114797)
	eje (0.0988338)