Non-Coding RNA Search

Ss1.1-rpty620b_a14.5

Sequence:


               
               TTCCCCCTACAACAACCACTTACATAACTGCTTAAAAATGCATCTTAAGAAAGGCCTGCC
CAGAGCATTGTTTGGAAATAGTCCTCACCTCTCTCCTCCCATTTGCTCTCTTCTTTTTTT
CTTGGAATTTCTTATCTCAATTGTAACTCTATGTATTTGTTTATTTACTTTGTGTAAAAA
AAGATAATAATAATAAGGGTGTGTTTCCTATACTGGAATGAATGAAAGAAGAAACTGTGT
CTGGATGTCTAGATTCTTCAACACTCTATTCCCAGCCCCTAGCATAATACCTGGCACAAA
TTAGGTGAATAATAAATAATTGTTGAAGGAATACATGCACACATTTGCTTATTTTTCTGT
TGGGAGTTCACTTTTCATTGAATGATAAGAGCTCTTTATATGTTAAAACTAGCAACCATT
TGTTTATTTCATATGCTGCAGAAATTTCGTCCCTGGTCATGTATGTATCAATTTAATTCA
TGATGTCTGATATACAGAAATATATTTTTTATTTAGATAAATTTATCTTTTCTTTCATGA
TTTCTCCTTTTGGTGATATGTTTGAAAAGATCTCCATGTCAGTGTTGTATAAATATTTGT
CTATTTTTTTTCTTTTAATTTTTTTAGACTGAAATCTTTACTCCAAATGGAATTTATTTT
TGATATAGATGTGATTAAGGCTTTAAATATTTATTTAGCTGTTACATCATCACTTATTGA
AAATTCCCTCTAACATTGTTTTGAAAATTCCACACATATCAAAGATTAAATTCTTACATG
TACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCCTACAACAACCACTTACATAACTGCTTAAAAATGCATCTTAAGAAAGGCCTGCC
CAGAGCATTGTTTGGAAATAGTCCTCACCTCTCTCCTCCCATTTGCTCTCTTCTTTTTTT
CTTGGAATTTCTTATCTCAATTGTAACTCTATGTATTTGTTTATTTACTTTGTGTAAAAA
AAGATAATAATAATAAGGGTGTGTTTCCTATACTGGAATGAATGAAAGAAGAAACTGTGT
CTGGATGTCTAGATTCTTCAACACTCTATTCCCAGCCCCTAGCATAATACCTGGCACAAA
TTAGGTGAATAATAAATAATTGTTGAAGGAATACATGCACACATTTGCTTATTTTTCTGT
TGGGAGTTCACTTTTCATTGAATGATAAGAGCTCTTTATATGTTAAAACTAGCAACCATT
TGTTTATTTCATATGCTGCAGAAATTTCGTCCCTGGTCATGTATGTATCAATTTAATTCA
TGATGTCTGATATACAGAAATATATTTTTTATTTAGATAAATTTATCTTTTCTTTCATGA
TTTCTCCTTTTGGTGATATGTTTGAAAAGATCTCCATGTCAGTGTTGTATAAATATTTGT
CTATTTTTTTTCTTTTAATTTTTTTAGACTGAAATCTTTACTCCAAATGGAATTTATTTT
TGATATAGATGTGATTAAGGCTTTAAATATTTATTTAGCTGTTACATCATCACTTATTGA
AAATTCCCTCTAACATTGTTTTGAAAATTCCACACATATCAAAGATTAAATTCTTACATG
TACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               4-785, gnl|bosTau2|chr4 (48340229-48339467)
               

               
               4-785, gnl|canFam2|chr14 (11872411-11870977)
               

               
               4-785, gnl|echTel1|scaffold_267393 (5544-6883)
               

               
               4-785, gnl|hg17|chr7 (126577776-126579198)
               

               
               4-785, gnl|Hg17|chr7 (126579510-126578715)
               

               
               4-785, gnl|mm7|chr6 (28143714-28145105)
               

               
               4-785, gnl|Mm7|chr6 (28145355-28144637)
               

               
               4-785, gnl|oryCun1|scaffold_208342 (28508-27061)
               

               
               4-785, gnl|panTro1|chr6 (128990659-128992078)
               

               
               4-785, gnl|rheMac2|chr3 (164903803-164905231)
               

               
               4-785, gnl|rn3|chr4 (55258582-55259980)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-785, gnl|bosTau2|chr4 (48340229-48339467)
               

               
               4-785, gnl|canFam2|chr14 (11872411-11870977)
               

               
               4-785, gnl|echTel1|scaffold_267393 (5544-6883)
               

               
               4-785, gnl|hg17|chr7 (126577776-126579198)
               

               
               4-785, gnl|Hg17|chr7 (126579510-126578715)
               

               
               4-785, gnl|mm7|chr6 (28143714-28145105)
               

               
               4-785, gnl|Mm7|chr6 (28145355-28144637)
               

               
               4-785, gnl|oryCun1|scaffold_208342 (28508-27061)
               

               
               4-785, gnl|panTro1|chr6 (128990659-128992078)
               

               
               4-785, gnl|rheMac2|chr3 (164903803-164905231)
               

               
               4-785, gnl|rn3|chr4 (55258582-55259980)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               pty (0.142714)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               pty (0.142714)
               

               
               thg (0.126791)

	4-785, gnl\|bosTau2\|chr4 (48340229-48339467)
	4-785, gnl\|canFam2\|chr14 (11872411-11870977)
	4-785, gnl\|echTel1\|scaffold_267393 (5544-6883)
	4-785, gnl\|hg17\|chr7 (126577776-126579198)
	4-785, gnl\|Hg17\|chr7 (126579510-126578715)
	4-785, gnl\|mm7\|chr6 (28143714-28145105)
	4-785, gnl\|Mm7\|chr6 (28145355-28144637)
	4-785, gnl\|oryCun1\|scaffold_208342 (28508-27061)
	4-785, gnl\|panTro1\|chr6 (128990659-128992078)
	4-785, gnl\|rheMac2\|chr3 (164903803-164905231)
	4-785, gnl\|rn3\|chr4 (55258582-55259980)