Non-Coding RNA Search

Ss1.1-rpty621b_j9.5

Sequence:


               
               TGAACCCAAGTGCCTGGATGAATTCCCAAACCTGAAAGACTTCATCACTCGCTTTGAGGG
CCTAAAGAAGATCTCTGCCTACATGAAGTCCAGCCGCTTCCACCCAAACCCAATGTTTCT
AAAGATTGCTGTGTGGGGCAACAAGTAGAGTCCTGGAAGACCAGGAGATGGAATAAGGAG
CCAGTGCTGTGTTTGCTGTGCCAGCACCCTGGAGAACACCTGGACTTCTTGCACCCAGAA
CCATCTTTCCTTTTCTTTCCCCTTCTATTCACTCTAGGTGCCCTATTGACCCCCTTATCT
CCCTCCCAACCCCTTTTCCATCCATCCTTTCAAGCTTCAGTCCCCACTTATCTTCAGCAA
AGTTCCTCTCTCACCCCATGTTATCCCTCCTTCACTAAAACCAACCTACTATCCTTCCCT
TCCATTGTTGCTTCTGTTATGAGGAGCCAAACCAGACCCCTGGTTCAGAGAGCTCTGCTC
TCAACTCTCAGCACTGCCCTGAAGACAAGTCCTGGCTTGGTGTGCAGGCCCTGCTTTCCA
GTGTGGTTCCTGCCCAGCCCTGTTTGATCCCCAGTAAAGCCTTAATCATACCTGCTGCAT
TATTTTCTCAGGTTTCCTGGAGTCATGACTGATTGTGTTGGGCGTAAGGGGGTCCATTTT
CCCCCTGTTGTCCGTTGCAGGGACTCCATGAATGAGGATGCATATGTGTGTGGGGTAGAG
GGTAGGATTATAATATTTCTTGCTCATTTCTATTTCCACTTCAGGTATCTCTGTTCCTGA
GCATGGGGTCTCTATAGAAGGGGGCCCCTTCTGTGCCTGGTTCCCTCTTTAATTCAGCAT
TCATGCTATACCCCCTGTAGACTTGTAGTACTCTGTATCATAGTTCAGGGGGCTCCTGGG
TGCTGGGGGAAGGGGTTGAATAGTCCATTGGTAGTTTTGGATCCTCATGGAATACCTTCT
GTCACCCTTCATGGAAACTTTTCCTGCTTTAGATATTCTTCATCTGTGTTCTTACAACAT
ATCTCAATAAAACATACCGGACTGTAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCCAAGTGCCTGGATGAATTCCCAAACCTGAAAGACTTCATCACTCGCTTTGAGGG
CCTAAAGAAGATCTCTGCCTACATGAAGTCCAGCCGCTTCCACCCAAACCCAATGTTTCT
AAAGATTGCTGTGTGGGGCAACAAGTAGAGTCCTGGAAGACCAGGAGATGGAATAAGGAG
CCAGTGCTGTGTTTGCTGTGCCAGCACCCTGGAGAACACCTGGACTTCTTGCACCCAGAA
CCATCTTTCCTTTTCTTTCCCCTTCTATTCACTCTAGGTGCCCTATTGACCCCCTTATCT
CCCTCCCAACCCCTTTTCCATCCATCCTTTCAAGCTTCAGTCCCCACTTATCTTCAGCAA
AGTTCCTCTCTCACCCCATGTTATCCCTCCTTCACTAAAACCAACCTACTATCCTTCCCT
TCCATTGTTGCTTCTGTTATGAGGAGCCAAACCAGACCCCTGGTTCAGAGAGCTCTGCTC
TCAACTCTCAGCACTGCCCTGAAGACAAGTCCTGGCTTGGTGTGCAGGCCCTGCTTTCCA
GTGTGGTTCCTGCCCAGCCCTGTTTGATCCCCAGTAAAGCCTTAATCATACCTGCTGCAT
TATTTTCTCAGGTTTCCTGGAGTCATGACTGATTGTGTTGGGCGTAAGGGGGTCCATTTT
CCCCCTGTTGTCCGTTGCAGGGACTCCATGAATGAGGATGCATATGTGTGTGGGGTAGAG
GGTAGGATTATAATATTTCTTGCTCATTTCTATTTCCACTTCAGGTATCTCTGTTCCTGA
GCATGGGGTCTCTATAGAAGGGGGCCCCTTCTGTGCCTGGTTCCCTCTTTAATTCAGCAT
TCATGCTATACCCCCTGTAGACTTGTAGTACTCTGTATCATAGTTCAGGGGGCTCCTGGG
TGCTGGGGGAAGGGGTTGAATAGTCCATTGGTAGTTTTGGATCCTCATGGAATACCTTCT
GTCACCCTTCATGGAAACTTTTCCTGCTTTAGATATTCTTCATCTGTGTTCTTACAACAT
ATCTCAATAAAACATACCGGACTGTAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-237, + strand, RNAz p=0.905001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, + strand, RNAz p=0.905001

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-484, gnl|bosTau2|chr29 (27087896-27088351)
               

               
               1-484, gnl|Hg17|chr6 (111474908-111474421)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-484, gnl|bosTau2|chr29 (27087896-27088351)
               

               
               1-484, gnl|Hg17|chr6 (111474908-111474421)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)

	1-484, gnl\|bosTau2\|chr29 (27087896-27088351)
	1-484, gnl\|Hg17\|chr6 (111474908-111474421)