Non-Coding RNA Search

Ss1.1-rpty624b_k18.5

Sequence:


               
               TGAGAAACTCCTCAAAGCTGATTCTAGCAATAACTACAGTTTACTGTCTATTGGGTCCCT
TTTCAGAGCTGACAGAAGAAATGAAATCCCTTACCCCATGGAAATCATGAAAGGCTCTCT
GCACATATTTATGTGAGCTTGCTTTTCTAAATACACCACTCAAAAATGCTGCTCAGTTTA
TCCATACACAATAGTTATACACCAGTGAGGTAAGTACTAATTTATTCCTAACCAACACTT
ATTTAGCTATTACTAGGTTCTACTGTGCTCAGCACATTCATAGACTATCTCACTGAATCC
TTTCAACAACTCTAGTAGGTTCTATTTTATAGACAAGAAAACTGAAGCACAGATATGTGA
CTTGCCCATGGTCACACAGCAGACGGAACTGGGATTTGAACCCATGCAGTATAACAGGAG
TTCATGTGTCTTATCATTATCTGTGACTTGGGGGGACACCATTACATTAAAATAAATGTC
ATTAAAATGGGTCACTGTATATAAAAGTACTTTGAAATTGTAAAGTAGTATACAATAAGA
TATTAGTAAAATATTACAATCAACAGAACACATCAGTGGAAGAAAGAGAGTGAAAACTCA
ATTTTATGTTACAGCTAACTCTGATGAGGATGTTTCAAGCCAGAGAAATGGATAAAGGAC
AGATCCAGAAAGTTTATGGCATGTGATAAATATTGCAATGACTTTTCAGAAGTATCAATT
GTTAGACACTGTGTCTATTTGGTGCTACAAAAAAAAAATGAACAAAACAAAATCCCTTGC
TATAAGGGCTTATAATAAACACACAGTGTGGAGATGAATCAAGGATATTTCACATTTGGG
GGAAGGACTGGGTGGTAGTACTATTTTCTCACCATTGCATGTGATCTTGTCTTTCTAATT
GTTTTTCATTATTTTTCTGAAAGAGCTGCAAAATTGTGCAGTGGTTCAACCTGACCAAAG
TGGTATTATGCTGCTGGGAAGTAAAAGTACTAGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAAACTCCTCAAAGCTGATTCTAGCAATAACTACAGTTTACTGTCTATTGGGTCCCT
TTTCAGAGCTGACAGAAGAAATGAAATCCCTTACCCCATGGAAATCATGAAAGGCTCTCT
GCACATATTTATGTGAGCTTGCTTTTCTAAATACACCACTCAAAAATGCTGCTCAGTTTA
TCCATACACAATAGTTATACACCAGTGAGGTAAGTACTAATTTATTCCTAACCAACACTT
ATTTAGCTATTACTAGGTTCTACTGTGCTCAGCACATTCATAGACTATCTCACTGAATCC
TTTCAACAACTCTAGTAGGTTCTATTTTATAGACAAGAAAACTGAAGCACAGATATGTGA
CTTGCCCATGGTCACACAGCAGACGGAACTGGGATTTGAACCCATGCAGTATAACAGGAG
TTCATGTGTCTTATCATTATCTGTGACTTGGGGGGACACCATTACATTAAAATAAATGTC
ATTAAAATGGGTCACTGTATATAAAAGTACTTTGAAATTGTAAAGTAGTATACAATAAGA
TATTAGTAAAATATTACAATCAACAGAACACATCAGTGGAAGAAAGAGAGTGAAAACTCA
ATTTTATGTTACAGCTAACTCTGATGAGGATGTTTCAAGCCAGAGAAATGGATAAAGGAC
AGATCCAGAAAGTTTATGGCATGTGATAAATATTGCAATGACTTTTCAGAAGTATCAATT
GTTAGACACTGTGTCTATTTGGTGCTACAAAAAAAAAATGAACAAAACAAAATCCCTTGC
TATAAGGGCTTATAATAAACACACAGTGTGGAGATGAATCAAGGATATTTCACATTTGGG
GGAAGGACTGGGTGGTAGTACTATTTTCTCACCATTGCATGTGATCTTGTCTTTCTAATT
GTTTTTCATTATTTTTCTGAAAGAGCTGCAAAATTGTGCAGTGGTTCAACCTGACCAAAG
TGGTATTATGCTGCTGGGAAGTAAAAGTACTAGATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-996, gnl|bosTau2|chr5 (7910480-7911446)
               

               
               11-996, gnl|Hg17|chr12 (79689777-79688772)
               

               
               11-996, gnl|Mm7|chr10 (106886653-106887624)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-996, gnl|bosTau2|chr5 (7910480-7911446)
               

               
               11-996, gnl|Hg17|chr12 (79689777-79688772)
               

               
               11-996, gnl|Mm7|chr10 (106886653-106887624)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

	11-996, gnl\|bosTau2\|chr5 (7910480-7911446)
	11-996, gnl\|Hg17\|chr12 (79689777-79688772)
	11-996, gnl\|Mm7\|chr10 (106886653-106887624)