Non-Coding RNA Search

Ss1.1-rpty624b_n18.5

Sequence:


               
               GAGGTTTCTTTGGGGTCTTGGCAGCACTAGCACGCTGGCAGATGACCATGATGTCTTGTC
CTTCCTGACCTTCAGTCTGAGTGAGCCGGGTCCGGAGCCTCCCCCGCAGCCCTTCCTTGA
GATGGAGCAGCTCCGCCTGGCAAGGCAGCTGGAAGGGCTGCGGGCAAGGCTGGCCCTGGG
CACCAAGGAGGACACGATTCTGAAGCCAAACTCCAAAGTCCAGGAGGAGGGGGAAAGAAT
CTTTGACCTGGAGGAAACACTGGACCGATACAGCCAGATCCTGCAGGCTCTCCAGGGTCT
CTCCAAACAGCTGGCCCAGGCTGAGAGGCAATGGAAGAAGGAGCTGGGGTCCACAGACTG
TGCCAGGCCTGAGAGCACCTGGGACTCAGCCAAGGTCAGTGCCCTACTCCGTGGACAGCT
GACTCTCCTCCAAGACCTGCAAGAGATGAGGGATGCAGCTGCTCACATGGCCTCAAGAGC
CCAGGTCTTCTACCTACCTGTGGGCACCAAGCATCATTTCTTAGAGCTGGCCCAGATCCT
GAGCCTACTGCAGAAGGACCTTCGGGGTCCAGCGAAAGCGGCAGCCAAGGACCCCCGCCC
ACCTGGCTGGCCCCCAGGGATTTTCTCGTGCCTTCGGCCTGGCATCTTCCTGTTCTTCCT
CCTCGTCCAGACTGTAGGCTTCTTCTGCTACGTACACTTCAGCAAGCAGGAGCTGGACAA
GAACCTTCAGGACTATCTGTCCACAGGCAGCCTTCCTCTGAGTCCAGCACCACAAATCTC
TAGGGCTCTGGGTGCTCTGAGACGGCAGCCCCTCTACCCCAACATACATGCATGACCTGC
CTCAAAGACCTGAAGAAAATGTCCACGACTCGAAACTAAGAAATCGATATATGCCTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTTCTTTGGGGTCTTGGCAGCACTAGCACGCTGGCAGATGACCATGATGTCTTGTC
CTTCCTGACCTTCAGTCTGAGTGAGCCGGGTCCGGAGCCTCCCCCGCAGCCCTTCCTTGA
GATGGAGCAGCTCCGCCTGGCAAGGCAGCTGGAAGGGCTGCGGGCAAGGCTGGCCCTGGG
CACCAAGGAGGACACGATTCTGAAGCCAAACTCCAAAGTCCAGGAGGAGGGGGAAAGAAT
CTTTGACCTGGAGGAAACACTGGACCGATACAGCCAGATCCTGCAGGCTCTCCAGGGTCT
CTCCAAACAGCTGGCCCAGGCTGAGAGGCAATGGAAGAAGGAGCTGGGGTCCACAGACTG
TGCCAGGCCTGAGAGCACCTGGGACTCAGCCAAGGTCAGTGCCCTACTCCGTGGACAGCT
GACTCTCCTCCAAGACCTGCAAGAGATGAGGGATGCAGCTGCTCACATGGCCTCAAGAGC
CCAGGTCTTCTACCTACCTGTGGGCACCAAGCATCATTTCTTAGAGCTGGCCCAGATCCT
GAGCCTACTGCAGAAGGACCTTCGGGGTCCAGCGAAAGCGGCAGCCAAGGACCCCCGCCC
ACCTGGCTGGCCCCCAGGGATTTTCTCGTGCCTTCGGCCTGGCATCTTCCTGTTCTTCCT
CCTCGTCCAGACTGTAGGCTTCTTCTGCTACGTACACTTCAGCAAGCAGGAGCTGGACAA
GAACCTTCAGGACTATCTGTCCACAGGCAGCCTTCCTCTGAGTCCAGCACCACAAATCTC
TAGGGCTCTGGGTGCTCTGAGACGGCAGCCCCTCTACCCCAACATACATGCATGACCTGC
CTCAAAGACCTGAAGAAAATGTCCACGACTCGAAACTAAGAAATCGATATATGCCTGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824843|ref|XP_586171.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824843|ref|XP_586171.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               96-231, + strand, RNAz p=0.996557
               

               
               96-231, + strand, RNAz p=0.994996

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-231, + strand, RNAz p=0.996557
               

               
               96-231, + strand, RNAz p=0.994996

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               96-231, gnl|bosTau2|chr21 (23002420-23002555)
               

               
               96-231, gnl|canFam2|chr30 (40880368-40880579)
               

               
               96-231, gnl|dasNov1|scaffold_15234 (39303-39500)
               

               
               96-231, gnl|echTel1|scaffold_320607 (7564-7772)
               

               
               96-231, gnl|hg17|chr15 (72899924-72900127)
               

               
               96-231, gnl|Hg17|chr15 (72900027-72900162)
               

               
               96-231, gnl|mm7|chr9 (57639647-57639451)
               

               
               96-231, gnl|Mm7|chr9 (57639549-57639414)
               

               
               96-231, gnl|oryCun1|scaffold_207143 (36184-36010)
               

               
               96-231, gnl|panTro1|chr16_random (22027700-22027903)
               

               
               96-231, gnl|rn3|chr8 (61385106-61384910)
               


               
               446-574, gnl|bosTau2|chr21 (23005196-23005324)
               

               
               446-574, gnl|Hg17|chr15 (72902948-72903076)
               

               
               446-574, gnl|Mm7|chr9 (57636956-57636828)
               


               
               700-898, gnl|bosTau2|chr21 (23007162-23007359)
               

               
               700-898, gnl|Hg17|chr15 (72904864-72905047)
               

               
               700-898, gnl|Mm7|chr9 (57634949-57634774)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-231, gnl|bosTau2|chr21 (23002420-23002555)
               

               
               96-231, gnl|canFam2|chr30 (40880368-40880579)
               

               
               96-231, gnl|dasNov1|scaffold_15234 (39303-39500)
               

               
               96-231, gnl|echTel1|scaffold_320607 (7564-7772)
               

               
               96-231, gnl|hg17|chr15 (72899924-72900127)
               

               
               96-231, gnl|Hg17|chr15 (72900027-72900162)
               

               
               96-231, gnl|mm7|chr9 (57639647-57639451)
               

               
               96-231, gnl|Mm7|chr9 (57639549-57639414)
               

               
               96-231, gnl|oryCun1|scaffold_207143 (36184-36010)
               

               
               96-231, gnl|panTro1|chr16_random (22027700-22027903)
               

               
               96-231, gnl|rn3|chr8 (61385106-61384910)
               


               
               446-574, gnl|bosTau2|chr21 (23005196-23005324)
               

               
               446-574, gnl|Hg17|chr15 (72902948-72903076)
               

               
               446-574, gnl|Mm7|chr9 (57636956-57636828)
               


               
               700-898, gnl|bosTau2|chr21 (23007162-23007359)
               

               
               700-898, gnl|Hg17|chr15 (72904864-72905047)
               

               
               700-898, gnl|Mm7|chr9 (57634949-57634774)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.570858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.570858)

	96-231, + strand, RNAz p=0.996557
	96-231, + strand, RNAz p=0.994996

	96-231, gnl\|bosTau2\|chr21 (23002420-23002555)
	96-231, gnl\|canFam2\|chr30 (40880368-40880579)
	96-231, gnl\|dasNov1\|scaffold_15234 (39303-39500)
	96-231, gnl\|echTel1\|scaffold_320607 (7564-7772)
	96-231, gnl\|hg17\|chr15 (72899924-72900127)
	96-231, gnl\|Hg17\|chr15 (72900027-72900162)
	96-231, gnl\|mm7\|chr9 (57639647-57639451)
	96-231, gnl\|Mm7\|chr9 (57639549-57639414)
	96-231, gnl\|oryCun1\|scaffold_207143 (36184-36010)
	96-231, gnl\|panTro1\|chr16_random (22027700-22027903)
	96-231, gnl\|rn3\|chr8 (61385106-61384910)

	446-574, gnl\|bosTau2\|chr21 (23005196-23005324)
	446-574, gnl\|Hg17\|chr15 (72902948-72903076)
	446-574, gnl\|Mm7\|chr9 (57636956-57636828)

	700-898, gnl\|bosTau2\|chr21 (23007162-23007359)
	700-898, gnl\|Hg17\|chr15 (72904864-72905047)
	700-898, gnl\|Mm7\|chr9 (57634949-57634774)