Non-Coding RNA Search

Ss1.1-rpty625b_n22.5

Sequence:


               
               CAAAACAACAAAACTGTACATTTTTTTTAAAGTTTGTTGAAAAGAATATTGTCTTATTCT
ATAAAACATTTCAAACCTAGTTAGATATTTGTAATCAAAAAACATTTGCGCAGAAAGCAG
CACTTAGGGCTGCCTGTCCTATACCCTGCGGTCGGACAGGAAGAGAACTGAACATGTCAC
CCTTCTGACATTCTAAGGCAGCTGGACTGGCAGCCGAGTGAGGGAGCGTGACGGCGAGGT
GGTGCGGAGCAGGCGGGGAAGCGAGCAGGGCCACTCTCGTAGCAGACAGGAGTGGGGACA
GGGGGAGAGCTTGTGATGGGCAGTGAAAATAAACGATTGGCTCTTATCAATCACTTGCAC
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAACAACAAAACTGTACATTTTTTTTAAAGTTTGTTGAAAAGAATATTGTCTTATTCT
ATAAAACATTTCAAACCTAGTTAGATATTTGTAATCAAAAAACATTTGCGCAGAAAGCAG
CACTTAGGGCTGCCTGTCCTATACCCTGCGGTCGGACAGGAAGAGAACTGAACATGTCAC
CCTTCTGACATTCTAAGGCAGCTGGACTGGCAGCCGAGTGAGGGAGCGTGACGGCGAGGT
GGTGCGGAGCAGGCGGGGAAGCGAGCAGGGCCACTCTCGTAGCAGACAGGAGTGGGGACA
GGGGGAGAGCTTGTGATGGGCAGTGAAAATAAACGATTGGCTCTTATCAATCACTTGCAC
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-192, - strand, RNAz p=0.737226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-192, - strand, RNAz p=0.737226

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               99-258, - strand, RNAmicro p=0.979256

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               99-258, - strand, RNAmicro p=0.979256

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-353, gnl|bosTau2|chr11 (21975604-21975240)
               

               
               3-353, gnl|Hg17|chr11 (62239171-62238815)
               

               
               3-353, gnl|Mm7|chr19_random (1483080-1482723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-353, gnl|bosTau2|chr11 (21975604-21975240)
               

               
               3-353, gnl|Hg17|chr11 (62239171-62238815)
               

               
               3-353, gnl|Mm7|chr19_random (1483080-1482723)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sto (0.359648)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 17 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	3-353, gnl\|bosTau2\|chr11 (21975604-21975240)
	3-353, gnl\|Hg17\|chr11 (62239171-62238815)
	3-353, gnl\|Mm7\|chr19_random (1483080-1482723)

	sto (0.359648)
	duo (0.345602)
	mcp (0.341297)
	pty (0.285429)
	fce (0.271592)
	med (0.232504)
	nbm (0.198649)
	aor (0.195274)
	fbs (0.175346)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	csk (0.140746)
	cst (0.140036)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)