Non-Coding RNA Search

Ss1.1-rpty628b_d16.5

Sequence:


               
               CAAACAAACAAAAAATATATATATATATATTTATTTTTTCATGTAGAGTTGCGCCAGAAC
AAGTCTGTATGGCCACAATCTGTGGATTCCCCCAACCTCAAGCTGAGGATCCAGGCGTGT
CCCTCGTGGGCCAGGCTCAGCAGGGGGAACTCAGAGGGTCAGAGGCAGGGGGAGCGGGCA
GGAGGCCTAGCTCAGAGCAGCACACTCCAGCGGGGGCCAGCACCGGCGGCCCAGCCCTGT
CCAGAGACCCCCGCCACCACCTTCTCTCTGGGGCCAGAAGCCTCAGGGAAGGAGGCTCTG
GGGAGCCCACAGGACGAAGGCATCTGGGGAACCAGAGGAACGGACACCTGCCTGCCTCCT
CCCTGCGACCAACCTCCGGCCCCTCGGCAGCCCTGCGATCCCGGAGAAGGGCCCTCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACAAACAAAAAATATATATATATATATTTATTTTTTCATGTAGAGTTGCGCCAGAAC
AAGTCTGTATGGCCACAATCTGTGGATTCCCCCAACCTCAAGCTGAGGATCCAGGCGTGT
CCCTCGTGGGCCAGGCTCAGCAGGGGGAACTCAGAGGGTCAGAGGCAGGGGGAGCGGGCA
GGAGGCCTAGCTCAGAGCAGCACACTCCAGCGGGGGCCAGCACCGGCGGCCCAGCCCTGT
CCAGAGACCCCCGCCACCACCTTCTCTCTGGGGCCAGAAGCCTCAGGGAAGGAGGCTCTG
GGGAGCCCACAGGACGAAGGCATCTGGGGAACCAGAGGAACGGACACCTGCCTGCCTCCT
CCCTGCGACCAACCTCCGGCCCCTCGGCAGCCCTGCGATCCCGGAGAAGGGCCCTCGGCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-102, - strand, RNAz p=0.58587
               

               
               198-383, - strand, RNAz p=0.999901
               

               
               213-354, - strand, RNAz p=0.940234

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-102, - strand, RNAz p=0.58587
               

               
               198-383, - strand, RNAz p=0.999901
               

               
               213-354, - strand, RNAz p=0.940234

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               267-401, - strand, RNAmicro p=0.908627

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               267-401, - strand, RNAmicro p=0.908627

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-418, gnl|bosTau2|chr18 (43838552-43838138)
               

               
               2-418, gnl|canFam2|chr1 (117680102-117678860)
               

               
               2-418, gnl|dasNov1|scaffold_117134 (3075-4283)
               

               
               2-418, gnl|echTel1|scaffold_318741 (19227-18445)
               

               
               2-418, gnl|hg17|chr19 (43389283-43390522)
               

               
               2-418, gnl|Hg17|chr19 (43389890-43390342)
               

               
               2-418, gnl|loxAfr1|scaffold_122905 (3169-4332)
               

               
               2-418, gnl|mm7|chr7 (26261451-26260361)
               

               
               2-418, gnl|monDom2|scaffold_139 (171495-172665)
               

               
               2-418, gnl|panTro1|chr20 (40286886-40288131)
               

               
               2-418, gnl|rheMac2|chr19 (44527989-44529219)
               

               
               2-418, gnl|rn3|chr1 (84535914-84534858)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-418, gnl|bosTau2|chr18 (43838552-43838138)
               

               
               2-418, gnl|canFam2|chr1 (117680102-117678860)
               

               
               2-418, gnl|dasNov1|scaffold_117134 (3075-4283)
               

               
               2-418, gnl|echTel1|scaffold_318741 (19227-18445)
               

               
               2-418, gnl|hg17|chr19 (43389283-43390522)
               

               
               2-418, gnl|Hg17|chr19 (43389890-43390342)
               

               
               2-418, gnl|loxAfr1|scaffold_122905 (3169-4332)
               

               
               2-418, gnl|mm7|chr7 (26261451-26260361)
               

               
               2-418, gnl|monDom2|scaffold_139 (171495-172665)
               

               
               2-418, gnl|panTro1|chr20 (40286886-40288131)
               

               
               2-418, gnl|rheMac2|chr19 (44527989-44529219)
               

               
               2-418, gnl|rn3|chr1 (84535914-84534858)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	2-102, - strand, RNAz p=0.58587
	198-383, - strand, RNAz p=0.999901
	213-354, - strand, RNAz p=0.940234

	2-418, gnl\|bosTau2\|chr18 (43838552-43838138)
	2-418, gnl\|canFam2\|chr1 (117680102-117678860)
	2-418, gnl\|dasNov1\|scaffold_117134 (3075-4283)
	2-418, gnl\|echTel1\|scaffold_318741 (19227-18445)
	2-418, gnl\|hg17\|chr19 (43389283-43390522)
	2-418, gnl\|Hg17\|chr19 (43389890-43390342)
	2-418, gnl\|loxAfr1\|scaffold_122905 (3169-4332)
	2-418, gnl\|mm7\|chr7 (26261451-26260361)
	2-418, gnl\|monDom2\|scaffold_139 (171495-172665)
	2-418, gnl\|panTro1\|chr20 (40286886-40288131)
	2-418, gnl\|rheMac2\|chr19 (44527989-44529219)
	2-418, gnl\|rn3\|chr1 (84535914-84534858)