Non-Coding RNA Search

Ss1.1-rpty629b_f15.5

Sequence:


               
               AGTGTCCTCATGGTTGTCCTGTACCTCATTGATGCTGTGGCTTGCAGTCTCCTGGAGATA
------------GTGTCCTAAGCCCAGACCCCAGGGTATGGAAGCCCTTTGGCAGGGGAC
CAGCCTTGCACTGAATGAATCTCACCCTCTGGGTTGAGGCAAATTGGAGTGGATGGAATG
AGGAACCTGACTCACTTGGCTCAGCCTGAGGTCTCTGCTTCGCCGGACTGGCTTCTATCC
ACACCAATAAGGCCATCCTGGCCCTGCACTGCTGGATACAGCTGTACCTGAATTCCTCAC
ATCCATGTGGTCTTGTTGCCCCCTGACAGGCACTAAAGGTGCTCGGCCCTTCCTGTTTTC
ATGTCTGCCAATCCCTGTAAACTCACTGATCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTCCTCATGGTTGTCCTGTACCTCATTGATGCTGTGGCTTGCAGTCTCCTGGAGATA
------------GTGTCCTAAGCCCAGACCCCAGGGTATGGAAGCCCTTTGGCAGGGGAC
CAGCCTTGCACTGAATGAATCTCACCCTCTGGGTTGAGGCAAATTGGAGTGGATGGAATG
AGGAACCTGACTCACTTGGCTCAGCCTGAGGTCTCTGCTTCGCCGGACTGGCTTCTATCC
ACACCAATAAGGCCATCCTGGCCCTGCACTGCTGGATACAGCTGTACCTGAATTCCTCAC
ATCCATGTGGTCTTGTTGCCCCCTGACAGGCACTAAAGGTGCTCGGCCCTTCCTGTTTTC
ATGTCTGCCAATCCCTGTAAACTCACTGATCCTCCT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               6-384, gnl|bosTau2|chr17 (37903541-37903931)
               

               
               6-384, gnl|canFam2|chr26 (13523405-13523789)
               

               
               6-384, gnl|dasNov1|scaffold_205441 (1468-1856)
               

               
               6-384, gnl|echTel1|scaffold_188870 (6422-6015)
               

               
               6-384, gnl|hg17|chr12 (111999899-112000321)
               

               
               6-384, gnl|Hg17|chr12 (112000377-111999992)
               

               
               6-384, gnl|loxAfr1|scaffold_87910 (5209-5580)
               

               
               6-384, gnl|mm7|chr5 (119913509-119913165)
               

               
               6-384, gnl|Mm7|chr5 (119913116-119913437)
               

               
               6-384, gnl|oryCun1|scaffold_62417 (523-914)
               

               
               6-384, gnl|rheMac2|chr11 (114023882-114024304)
               

               
               6-384, gnl|rn3|chr12 (36911372-36911752)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-384, gnl|bosTau2|chr17 (37903541-37903931)
               

               
               6-384, gnl|canFam2|chr26 (13523405-13523789)
               

               
               6-384, gnl|dasNov1|scaffold_205441 (1468-1856)
               

               
               6-384, gnl|echTel1|scaffold_188870 (6422-6015)
               

               
               6-384, gnl|hg17|chr12 (111999899-112000321)
               

               
               6-384, gnl|Hg17|chr12 (112000377-111999992)
               

               
               6-384, gnl|loxAfr1|scaffold_87910 (5209-5580)
               

               
               6-384, gnl|mm7|chr5 (119913509-119913165)
               

               
               6-384, gnl|Mm7|chr5 (119913116-119913437)
               

               
               6-384, gnl|oryCun1|scaffold_62417 (523-914)
               

               
               6-384, gnl|rheMac2|chr11 (114023882-114024304)
               

               
               6-384, gnl|rn3|chr12 (36911372-36911752)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pty (0.142714)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               sug (0.127291)

	6-384, gnl\|bosTau2\|chr17 (37903541-37903931)
	6-384, gnl\|canFam2\|chr26 (13523405-13523789)
	6-384, gnl\|dasNov1\|scaffold_205441 (1468-1856)
	6-384, gnl\|echTel1\|scaffold_188870 (6422-6015)
	6-384, gnl\|hg17\|chr12 (111999899-112000321)
	6-384, gnl\|Hg17\|chr12 (112000377-111999992)
	6-384, gnl\|loxAfr1\|scaffold_87910 (5209-5580)
	6-384, gnl\|mm7\|chr5 (119913509-119913165)
	6-384, gnl\|Mm7\|chr5 (119913116-119913437)
	6-384, gnl\|oryCun1\|scaffold_62417 (523-914)
	6-384, gnl\|rheMac2\|chr11 (114023882-114024304)
	6-384, gnl\|rn3\|chr12 (36911372-36911752)