Ss1.1-rpty630b_g24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTACATTTCCTTGGATGTCAACGCTATTCTCTTCCTGCTGGGCAGACCCATCATGCTG CCCGAGGTCAACACCTCCTTCGTGCTGCCACATCATGTGGGCACCCGCGGTGCCATGGTA ACCGTGGGCCTCTCCCAGGACCTGTTCGACTCCGCCCTCCTGCTGCTGCAGAAGGCTGGC GTGCTCAACATGGACATCACTGGGCAGCTGAAGTCAGATGACAACATACTGAACACGTCC GTGCTGGGCCAGCTCATCCCTGAGGTGGCCCGTCAGTTCCCCGAGCCCATGGCCCTGGTG CTCAAGGTGCGGCTGGGTGCCATGCCCACTGTCACACTCCATACCAACAACGCCACACTG CAGCTGCAGCCCTTTGTGGAGGTCCTGGCCCCAGCCTCTAACTCGGCTTTCCAGTCCCTC TTCTCCCTCAATGTGGTAGTGAACCTGAGCCTCCAGCTCTTCGTGTCCGGGGTGAGGCTT CGGGGGACCACGTCTGTGCTGGGGAATGTTCAGATCACTATGGCCTCCTCCAATGTGGGC TTCATTGATATGGAGAAAGTGCAGATACTCATGGACACCGTGTTTGAGAGGCCCCTGCTG GACCACCTCAACGCTCTCCTGGGCCTGGGCATTGCCCTCCCCCACGTGGTCAACCTCCAC TACATCTCCCCTGAGATCTTCGTCTATGAGGGCTACGTCGTGGTCTCCAGTGCACTCTTG TACCAGCGCTGACGTGGGACCACTGGGAGTGCTGCTGTGGGAACCCTTTTGCCTCCAGCC ACTTGGGAAACAGAGACAAAGCCACATTTAGTCATCACCAGCAAGCTGGATGGCCCCACC GGGCTGCCTAATCCCCCTCCGCCTTCTCCCCTCCTCCCTTCACCCCCTCTTTGTGGGGAG CAGACACCTCCTCCAGGGTGTATAGATCTCTCTCCTCTTGCATTAAACTTCTTCTCTTGA GCTGCAACTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTACATTTCCTTGGATGTCAACGCTATTCTCTTCCTGCTGGGCAGACCCATCATGCTG CCCGAGGTCAACACCTCCTTCGTGCTGCCACATCATGTGGGCACCCGCGGTGCCATGGTA ACCGTGGGCCTCTCCCAGGACCTGTTCGACTCCGCCCTCCTGCTGCTGCAGAAGGCTGGC GTGCTCAACATGGACATCACTGGGCAGCTGAAGTCAGATGACAACATACTGAACACGTCC GTGCTGGGCCAGCTCATCCCTGAGGTGGCCCGTCAGTTCCCCGAGCCCATGGCCCTGGTG CTCAAGGTGCGGCTGGGTGCCATGCCCACTGTCACACTCCATACCAACAACGCCACACTG CAGCTGCAGCCCTTTGTGGAGGTCCTGGCCCCAGCCTCTAACTCGGCTTTCCAGTCCCTC TTCTCCCTCAATGTGGTAGTGAACCTGAGCCTCCAGCTCTTCGTGTCCGGGGTGAGGCTT CGGGGGACCACGTCTGTGCTGGGGAATGTTCAGATCACTATGGCCTCCTCCAATGTGGGC TTCATTGATATGGAGAAAGTGCAGATACTCATGGACACCGTGTTTGAGAGGCCCCTGCTG GACCACCTCAACGCTCTCCTGGGCCTGGGCATTGCCCTCCCCCACGTGGTCAACCTCCAC TACATCTCCCCTGAGATCTTCGTCTATGAGGGCTACGTCGTGGTCTCCAGTGCACTCTTG TACCAGCGCTGACGTGGGACCACTGGGAGTGCTGCTGTGGGAACCCTTTTGCCTCCAGCC ACTTGGGAAACAGAGACAAAGCCACATTTAGTCATCACCAGCAAGCTGGATGGCCCCACC GGGCTGCCTAATCCCCCTCCGCCTTCTCCCCTCCTCCCTTCACCCCCTCTTTGTGGGGAG CAGACACCTCCTCCAGGGTGTATAGATCTCTCTCCTCTTGCATTAAACTTCTTCTCTTGA GCTGCAACTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 25-442, - strand, RNAz p=0.932796 | |
| 25-442, - strand, RNAz p=0.879931 | |
| 865-972, - strand, RNAz p=0.829714 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 25-442, - strand, RNAz p=0.932796 | |
| 25-442, - strand, RNAz p=0.879931 | |
| 865-972, - strand, RNAz p=0.829714 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 25-210, gnl|bosTau2|chr13 (47038965-47039150) | |
| 25-210, gnl|canFam2|chr24 (25260202-25260663) | |
| 25-210, gnl|dasNov1|scaffold_2706 (47183-46727) | |
| 25-210, gnl|echTel1|scaffold_312333 (43108-42687) | |
| 25-210, gnl|hg17|chr20 (31069750-31070250) | |
| 25-210, gnl|Hg17|chr20 (31070104-31070289) | |
| 25-210, gnl|loxAfr1|scaffold_31831 (4348-3885) | |
| 25-210, gnl|mm7|chr2 (153629979-153630391) | |
| 25-210, gnl|Mm7|chr2 (153630242-153630430) | |
| 25-210, gnl|panTro1|chr21 (33044064-33044564) | |
| 25-210, gnl|rheMac2|chr10 (31529853-31529352) | |
| 25-210, gnl|rn3|chr3 (144178741-144179147) | |
| 244-442, gnl|bosTau2|chr13 (47039991-47040189) | |
| 244-442, gnl|canFam2|chr24 (25261486-25261697) | |
| 244-442, gnl|dasNov1|scaffold_2706 (45969-45766) | |
| 244-442, gnl|echTel1|scaffold_312333 (41824-41614) | |
| 244-442, gnl|hg17|chr20 (31070993-31071196) | |
| 244-442, gnl|Hg17|chr20 (31071030-31071225) | |
| 244-442, gnl|mm7|chr2 (153631222-153631411) | |
| 244-442, gnl|Mm7|chr2 (153631249-153631440) | |
| 244-442, gnl|panTro1|chr21 (33045364-33045567) | |
| 244-442, gnl|rheMac2|chr10 (31528643-31528440) | |
| 244-442, gnl|rn3|chr3 (144179913-144180102) | |
| 682-972, gnl|bosTau2|chr13 (47043666-47043973) | |
| 682-972, gnl|canFam2|chr24 (25265145-25265758) | |
| 682-972, gnl|dasNov1|scaffold_238548 (3098-3677) | |
| 682-972, gnl|hg17|chr20 (31074685-31075324) | |
| 682-972, gnl|Hg17|chr20 (31074800-31075175) | |
| 682-972, gnl|mm7|chr2 (153635740-153636266) | |
| 682-972, gnl|Mm7|chr2 (153635838-153636135) | |
| 682-972, gnl|panTro1|chr21 (33050322-33050944) | |
| 682-972, gnl|rheMac2|chr10 (31524996-31524343) | |
| 682-972, gnl|rn3|chr3 (144184474-144184990) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-210, gnl|bosTau2|chr13 (47038965-47039150) | |
| 25-210, gnl|canFam2|chr24 (25260202-25260663) | |
| 25-210, gnl|dasNov1|scaffold_2706 (47183-46727) | |
| 25-210, gnl|echTel1|scaffold_312333 (43108-42687) | |
| 25-210, gnl|hg17|chr20 (31069750-31070250) | |
| 25-210, gnl|Hg17|chr20 (31070104-31070289) | |
| 25-210, gnl|loxAfr1|scaffold_31831 (4348-3885) | |
| 25-210, gnl|mm7|chr2 (153629979-153630391) | |
| 25-210, gnl|Mm7|chr2 (153630242-153630430) | |
| 25-210, gnl|panTro1|chr21 (33044064-33044564) | |
| 25-210, gnl|rheMac2|chr10 (31529853-31529352) | |
| 25-210, gnl|rn3|chr3 (144178741-144179147) | |
| 244-442, gnl|bosTau2|chr13 (47039991-47040189) | |
| 244-442, gnl|canFam2|chr24 (25261486-25261697) | |
| 244-442, gnl|dasNov1|scaffold_2706 (45969-45766) | |
| 244-442, gnl|echTel1|scaffold_312333 (41824-41614) | |
| 244-442, gnl|hg17|chr20 (31070993-31071196) | |
| 244-442, gnl|Hg17|chr20 (31071030-31071225) | |
| 244-442, gnl|mm7|chr2 (153631222-153631411) | |
| 244-442, gnl|Mm7|chr2 (153631249-153631440) | |
| 244-442, gnl|panTro1|chr21 (33045364-33045567) | |
| 244-442, gnl|rheMac2|chr10 (31528643-31528440) | |
| 244-442, gnl|rn3|chr3 (144179913-144180102) | |
| 682-972, gnl|bosTau2|chr13 (47043666-47043973) | |
| 682-972, gnl|canFam2|chr24 (25265145-25265758) | |
| 682-972, gnl|dasNov1|scaffold_238548 (3098-3677) | |
| 682-972, gnl|hg17|chr20 (31074685-31075324) | |
| 682-972, gnl|Hg17|chr20 (31074800-31075175) | |
| 682-972, gnl|mm7|chr2 (153635740-153636266) | |
| 682-972, gnl|Mm7|chr2 (153635838-153636135) | |
| 682-972, gnl|panTro1|chr21 (33050322-33050944) | |
| 682-972, gnl|rheMac2|chr10 (31524996-31524343) | |
| 682-972, gnl|rn3|chr3 (144184474-144184990) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (4.99501) | |
| fli (0.811524) |