Non-Coding RNA Search

Ss1.1-rpty630b_l22.5

Sequence:


               
               CGGTGGTTTAAAAAAATCACATGCTCTAGATCAAAGATAGAGAAGAAATTCAAAGACATT
GATTAGATTAATACGGTAGATACCCTATGACATTTACTTCCAATATTCAATACTACAAGC
TACCAAAAAGGTTTACCATCCTAGCTTTGCTGTCAACTAGCCTGCAGTCATGTCACCAAC
CCACATTAGATCCGTTTTCTCATCTGTAAAACATATCGGCTTGGCCTTTCAGGCCTTGGC
CCTCAGCTCTGTAGTCCTTGAAGCAGTGTGAAGGAGAGCTTGATGGCCCACAATTAATAA
GGACTCTGGCTCTGGTCACTATTGTGGCACAGGTTTGATCTTGGGAACATCTGCATGCCA
CAGGCACAGAAAAAGAAAGAAAATCCATGTATAACT------------------------
------------------------------------------------------------
------------------------CGTGCCATAGGTGTGGCCAAAAAAAACAAGTAAGGA
CTCTGGTCATTTGTACTTTTTCAATATTGGAGTATTGACGTTTCTCACTTCTTGTACAAG
AAGAGAATTTAATGGCAAGAAAAAAAGTAGTCATGTTTTAAGCTCAAGTATAGACAGAAA
AATCTAGTTTTTATGTATAAAGAAAGAAAACATTTGGGGGGAAAATAGTTTGTATTTAAA
GGGGATATTTTATTATCTCAGAATACTTATAAAGTCTATGGCTTGAATTCAGTGTTAAAA
ATTCTAATGAAAATATATAAAGCCACATGCTACATGCCCAGGAAAAGTTTCACACCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGTTTAAAAAAATCACATGCTCTAGATCAAAGATAGAGAAGAAATTCAAAGACATT
GATTAGATTAATACGGTAGATACCCTATGACATTTACTTCCAATATTCAATACTACAAGC
TACCAAAAAGGTTTACCATCCTAGCTTTGCTGTCAACTAGCCTGCAGTCATGTCACCAAC
CCACATTAGATCCGTTTTCTCATCTGTAAAACATATCGGCTTGGCCTTTCAGGCCTTGGC
CCTCAGCTCTGTAGTCCTTGAAGCAGTGTGAAGGAGAGCTTGATGGCCCACAATTAATAA
GGACTCTGGCTCTGGTCACTATTGTGGCACAGGTTTGATCTTGGGAACATCTGCATGCCA
CAGGCACAGAAAAAGAAAGAAAATCCATGTATAACT------------------------
------------------------------------------------------------
------------------------CGTGCCATAGGTGTGGCCAAAAAAAACAAGTAAGGA
CTCTGGTCATTTGTACTTTTTCAATATTGGAGTATTGACGTTTCTCACTTCTTGTACAAG
AAGAGAATTTAATGGCAAGAAAAAAAGTAGTCATGTTTTAAGCTCAAGTATAGACAGAAA
AATCTAGTTTTTATGTATAAAGAAAGAAAACATTTGGGGGGAAAATAGTTTGTATTTAAA
GGGGATATTTTATTATCTCAGAATACTTATAAAGTCTATGGCTTGAATTCAGTGTTAAAA
ATTCTAATGAAAATATATAAAGCCACATGCTACATGCCCAGGAAAAGTTTCACACCTCAC

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               117-309, gnl|bosTau2|chr11 (27838342-27838542)
               

               
               117-309, gnl|Hg17|chr9 (82826749-82826542)
               


               
               427-705, gnl|bosTau2|chr11 (27838531-27838805)
               

               
               427-705, gnl|Hg17|chr9 (82826555-82826309)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-309, gnl|bosTau2|chr11 (27838342-27838542)
               

               
               117-309, gnl|Hg17|chr9 (82826749-82826542)
               


               
               427-705, gnl|bosTau2|chr11 (27838531-27838805)
               

               
               427-705, gnl|Hg17|chr9 (82826555-82826309)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	117-309, gnl\|bosTau2\|chr11 (27838342-27838542)
	117-309, gnl\|Hg17\|chr9 (82826749-82826542)

	427-705, gnl\|bosTau2\|chr11 (27838531-27838805)
	427-705, gnl\|Hg17\|chr9 (82826555-82826309)