Ss1.1-rpty634b_a2r189.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTGATACTTGCCTAACATGCATGTGCTGTAAAAATAGTTAACAGGGA AATAACTTGAGATGATGGCTAGCTTTTGTTTAATGTCTTATGAAATTTTCATGAACAATC CAAGCATAATTGTTAAGAACACGTGTATTAAGTTCATGTAAGTGGAATAAAAGTTTTACG AATGGACTTTTCAACTACTTTCTCTACAGCTTTTCATGTAAATTAGCCTTTGGTTCTAAA ACTTCTCTAAAGGAAATTGTACATTTTTGGAAATTTATTCCTTATTCCCTCTTGGCAGCT AATGGGCTTTTACCAAGTTTGAATACAAAGTTTTATATAACAACAAAATACTACTAATAT AACTACTACTGTTCCCAACCATATCCCATACTCCCCTCTCCCCCTGGGGAAAGAAATTTT TTTTTTTTTTTTAGTGGCAGGGGGGATTGATTGAAAAAAAGTAATGTGTTCCATTTAAAA TTTTGGTATATGGCATTTTCTAACTTAGGAAGCCACAATGTTCTTAGCCCATCATGACAT TGGGTAGCATTAACTGTAAGTCTCGTGCTTCCAGATCACTTTTGTTGTTAAGAATTTCTT GACGCTCTTATAGCTTGCCTTCAGTTTTGATCCTTTACTCTTTCTATTTGTCAGGTGCAC AGGATTACCCCTCTTCAGCCTTCTGTCTTGTCACCAACCATTTCTACTTGGTGGCCATGT ACTTGGGGGAAAGGCCGCATGATCTTTCTGGCTCCACTCAGTGTCTGATGATGCCCTGCT TCCTTTGCTTGCATCCCACAAACTATTTCCCTCATCCTCTTCACTGCAGCAAATCTCTCC TTAGTTGATGAGATTGTGTTTATCTCCCTATAAACCCTGCCTACCCTGAATGGTCTGTCA TTGTCTTTGCCTTTAAAATCTTCCTCTTCCTTTCTTTAAATAATGATGGGGCTAAGTTAT ACCCAAAGCTCACCCTGCAGACCATTTCCTCAGTACCTTGCAGAAATCACCAAACAAAAA ATACCATTTTAAAAGAGGTGTATTTTTTTTTTCTTTTAGAATGTAAGCTCCTCAAGAGCA GGGACAATGTTTTCTGTATGTTCTATTGTGCCTAGTACACTGTAAATGCTCAATAAATAC TGATGATGGGAGGCAGTGAGTCTTGATGATAAGGGTGAGAAACTGAAATCCCAAATATGG TTTTGTTGCTTGTTTTATTATGACCTCAGTTTAAATTGGGAAATAACAGCCCTTTGGGAC AGTTGTCCCAAATATTACATTCAAATAAAAGTGCAATGGAGAAAAAAAAAAAAAAAAAAA AAGGAGGAAAAGATCTATCATGCATTTGGGACAACATAATGCATCTTCACTCACGGCTCT TTTGTTACTGATTTCTCCTGACCCCCAGGCCAAGGACACAAAATAATCATTTTACAGCTA CAGAGAATTAAGCTAGGCTGAGGAGATGGGTCTTACTCAAATTATAAAAATAAAACTCTA AAGTTTGTCACATTTGCCTATTTATGTGCCTCAGTCATCGACTAAACTAGTTTGATTCTG AAATAAATTGTGATACTTCATTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTGATACTTGCCTAACATGCATGTGCTGTAAAAATAGTTAACAGGGA AATAACTTGAGATGATGGCTAGCTTTTGTTTAATGTCTTATGAAATTTTCATGAACAATC CAAGCATAATTGTTAAGAACACGTGTATTAAGTTCATGTAAGTGGAATAAAAGTTTTACG AATGGACTTTTCAACTACTTTCTCTACAGCTTTTCATGTAAATTAGCCTTTGGTTCTAAA ACTTCTCTAAAGGAAATTGTACATTTTTGGAAATTTATTCCTTATTCCCTCTTGGCAGCT AATGGGCTTTTACCAAGTTTGAATACAAAGTTTTATATAACAACAAAATACTACTAATAT AACTACTACTGTTCCCAACCATATCCCATACTCCCCTCTCCCCCTGGGGAAAGAAATTTT TTTTTTTTTTTTAGTGGCAGGGGGGATTGATTGAAAAAAAGTAATGTGTTCCATTTAAAA TTTTGGTATATGGCATTTTCTAACTTAGGAAGCCACAATGTTCTTAGCCCATCATGACAT TGGGTAGCATTAACTGTAAGTCTCGTGCTTCCAGATCACTTTTGTTGTTAAGAATTTCTT GACGCTCTTATAGCTTGCCTTCAGTTTTGATCCTTTACTCTTTCTATTTGTCAGGTGCAC AGGATTACCCCTCTTCAGCCTTCTGTCTTGTCACCAACCATTTCTACTTGGTGGCCATGT ACTTGGGGGAAAGGCCGCATGATCTTTCTGGCTCCACTCAGTGTCTGATGATGCCCTGCT TCCTTTGCTTGCATCCCACAAACTATTTCCCTCATCCTCTTCACTGCAGCAAATCTCTCC TTAGTTGATGAGATTGTGTTTATCTCCCTATAAACCCTGCCTACCCTGAATGGTCTGTCA TTGTCTTTGCCTTTAAAATCTTCCTCTTCCTTTCTTTAAATAATGATGGGGCTAAGTTAT ACCCAAAGCTCACCCTGCAGACCATTTCCTCAGTACCTTGCAGAAATCACCAAACAAAAA ATACCATTTTAAAAGAGGTGTATTTTTTTTTTCTTTTAGAATGTAAGCTCCTCAAGAGCA GGGACAATGTTTTCTGTATGTTCTATTGTGCCTAGTACACTGTAAATGCTCAATAAATAC TGATGATGGGAGGCAGTGAGTCTTGATGATAAGGGTGAGAAACTGAAATCCCAAATATGG TTTTGTTGCTTGTTTTATTATGACCTCAGTTTAAATTGGGAAATAACAGCCCTTTGGGAC AGTTGTCCCAAATATTACATTCAAATAAAAGTGCAATGGAGAAAAAAAAAAAAAAAAAAA AAGGAGGAAAAGATCTATCATGCATTTGGGACAACATAATGCATCTTCACTCACGGCTCT TTTGTTACTGATTTCTCCTGACCCCCAGGCCAAGGACACAAAATAATCATTTTACAGCTA CAGAGAATTAAGCTAGGCTGAGGAGATGGGTCTTACTCAAATTATAAAAATAAAACTCTA AAGTTTGTCACATTTGCCTATTTATGTGCCTCAGTCATCGACTAAACTAGTTTGATTCTG AAATAAATTGTGATACTTCATTAA |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr16 (823784-823598) | |
| 1-186, gnl|canFam2|chr15 (22955050-22954709) | |
| 1-186, gnl|dasNov1|scaffold_23908 (1895-2194) | |
| 1-186, gnl|dasNov1|scaffold_23908 (2194-1876) | |
| 1-186, gnl|echTel1|scaffold_263985 (5832-6140) | |
| 1-186, gnl|echTel1|scaffold_277489 (6040-5734) | |
| 1-186, gnl|hg17|chr15 (43136665-43137000) | |
| 1-186, gnl|Hg17|chr2 (127030433-127030240) | |
| 1-186, gnl|hg17|chr9 (34911184-34911502) | |
| 1-186, gnl|loxAfr1|scaffold_17268 (28066-28367) | |
| 1-186, gnl|loxAfr1|scaffold_17268 (28367-28047) | |
| 1-186, gnl|Mm7|chr3 (92797027-92797213) | |
| 1-186, gnl|mm7|chr9 (82294115-82293845) | |
| 1-186, gnl|mm7|chr9 (82293844-82294134) | |
| 1-186, gnl|monDom2|scaffold_1 (153258202-153257897) | |
| 1-186, gnl|monDom2|scaffold_1 (153257902-153258221) | |
| 1-186, gnl|oryCun1|scaffold_201938 (47893-48163) | |
| 1-186, gnl|oryCun1|scaffold_201938 (48163-47874) | |
| 1-186, gnl|panTro1|chr11 (35466277-35466592) | |
| 1-186, gnl|panTro1|chr16 (43083322-43083657) | |
| 1-186, gnl|rheMac2|chr5 (60064482-60064163) | |
| 1-186, gnl|rheMac2|chr7 (23409503-23409843) | |
| 1-186, gnl|rn3|chrX (127142994-127142659) | |
| 1-186, gnl|rn3|chrX (127142675-127142994) | |
| 1-186, gnl|xenTro1|scaffold_3 (6101008-6101355) | |
| 1-186, gnl|xenTro1|scaffold_3 (6101355-6100989) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr16 (823784-823598) | |
| 1-186, gnl|canFam2|chr15 (22955050-22954709) | |
| 1-186, gnl|dasNov1|scaffold_23908 (1895-2194) | |
| 1-186, gnl|dasNov1|scaffold_23908 (2194-1876) | |
| 1-186, gnl|echTel1|scaffold_263985 (5832-6140) | |
| 1-186, gnl|echTel1|scaffold_277489 (6040-5734) | |
| 1-186, gnl|hg17|chr15 (43136665-43137000) | |
| 1-186, gnl|Hg17|chr2 (127030433-127030240) | |
| 1-186, gnl|hg17|chr9 (34911184-34911502) | |
| 1-186, gnl|loxAfr1|scaffold_17268 (28066-28367) | |
| 1-186, gnl|loxAfr1|scaffold_17268 (28367-28047) | |
| 1-186, gnl|Mm7|chr3 (92797027-92797213) | |
| 1-186, gnl|mm7|chr9 (82294115-82293845) | |
| 1-186, gnl|mm7|chr9 (82293844-82294134) | |
| 1-186, gnl|monDom2|scaffold_1 (153258202-153257897) | |
| 1-186, gnl|monDom2|scaffold_1 (153257902-153258221) | |
| 1-186, gnl|oryCun1|scaffold_201938 (47893-48163) | |
| 1-186, gnl|oryCun1|scaffold_201938 (48163-47874) | |
| 1-186, gnl|panTro1|chr11 (35466277-35466592) | |
| 1-186, gnl|panTro1|chr16 (43083322-43083657) | |
| 1-186, gnl|rheMac2|chr5 (60064482-60064163) | |
| 1-186, gnl|rheMac2|chr7 (23409503-23409843) | |
| 1-186, gnl|rn3|chrX (127142994-127142659) | |
| 1-186, gnl|rn3|chrX (127142675-127142994) | |
| 1-186, gnl|xenTro1|scaffold_3 (6101008-6101355) | |
| 1-186, gnl|xenTro1|scaffold_3 (6101355-6100989) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| eye (0.852515) | |
| cbl (0.688784) | |
| ece (0.687916) | |
| ova (0.645661) | |
| bla (0.621736) | |
| fat (0.58971) | |
| lin (0.582411) | |
| ill (0.526778) | |
| rec (0.519211) | |
| ebs (0.473205) | |
| amn (0.417711) | |
| fli (0.405762) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ese (0.379507) | |
| gul (0.355177) | |
| fty (0.351679) | |
| ton (0.351) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| nco (0.323468) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| thg (0.253582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.852515) | |
| cbl (0.688784) | |
| ece (0.687916) | |
| ova (0.645661) | |
| bla (0.621736) | |
| fat (0.58971) | |
| lin (0.582411) | |
| ill (0.526778) | |
| rec (0.519211) | |
| ebs (0.473205) | |
| amn (0.417711) | |
| fli (0.405762) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ese (0.379507) | |
| gul (0.355177) | |
| fty (0.351679) | |
| ton (0.351) | |
| duo (0.345602) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| nco (0.323468) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| thg (0.253582) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |