Ss1.1-rpty635b_j2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACAAGTGTTTGAAGGACACACCCATTATGTTATGCAGATTGTGATCAACCCCAAAGA TAACAACCAGTTTGCCAGCGCTTCTTTGGACAGGACTATCAAGGTGTGGCAGCTGGGCTC CTCATCACCAAACTTCACTCTGGAGGGACATGAGAAAGGCGTGAATTGCATCGATTACTA CAGTGGTGGCGACAAGCCATACCTCATTTCAGGTGCAGATGACCGTCTTGTGAAAATATG GGACTATCAGAATAAAACATGTGTGCAAACGCTGGAGGGGCACGCCCAAAACGTGTCTTG TGCCAGTTTTCATCCTGAGCTGCCAATCATCATCACAGGTTCAGAGGATGGAACTGTGCG AATTTGGCATTCAAGCACCTATCGCCTCGAGAGTACCTTGAATTATGGAATGGAGAGGGT GTGGTGTGTGGCCAGTCTGAGAGGGTCCAACAACGTTGCTTTGGGCTATGATGAAGGGAG CATCATTGTTAAGCTTGGTCGGGAGGAACCTGCCATGTCCATGGATGCCAATGGAAAGAT AATTTGGGCCAAACATTCAGAGGTCCAGCAGGCCAACCTAAAAGCAATGGGAGATGCTGA AATTAAAGATGGAGAAAGATTGCCACTGGCAGTAAAGGATATGGGCAGTTGTGAAATATA CCCTCAGACTATTCAGCACAATCCTAATGGGCGGTTTGTTGTGGTGTGTGGTGATGGCGA GTATATCATCTATACGGCAATGGCCTTAAGAAACAAGAGCTTTGGGTCTGCCCAGGAGTT TGCGTGGGCCCACGATTCTTCAGAATATGCGATCAGAGAGAGCAACAGTGTTGTAAAGAT ATTTAAGAACTTTAAGGAAAAAAAATCATTTAAACCAGATTTTGGAGCTGAAAGTATCTA TGGAGGCTTCTTACTGGGAGTGAGATCTGTCAATGGCTTAGCTTTCTACGATTGGGACAA TACAGAGCTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACAAGTGTTTGAAGGACACACCCATTATGTTATGCAGATTGTGATCAACCCCAAAGA TAACAACCAGTTTGCCAGCGCTTCTTTGGACAGGACTATCAAGGTGTGGCAGCTGGGCTC CTCATCACCAAACTTCACTCTGGAGGGACATGAGAAAGGCGTGAATTGCATCGATTACTA CAGTGGTGGCGACAAGCCATACCTCATTTCAGGTGCAGATGACCGTCTTGTGAAAATATG GGACTATCAGAATAAAACATGTGTGCAAACGCTGGAGGGGCACGCCCAAAACGTGTCTTG TGCCAGTTTTCATCCTGAGCTGCCAATCATCATCACAGGTTCAGAGGATGGAACTGTGCG AATTTGGCATTCAAGCACCTATCGCCTCGAGAGTACCTTGAATTATGGAATGGAGAGGGT GTGGTGTGTGGCCAGTCTGAGAGGGTCCAACAACGTTGCTTTGGGCTATGATGAAGGGAG CATCATTGTTAAGCTTGGTCGGGAGGAACCTGCCATGTCCATGGATGCCAATGGAAAGAT AATTTGGGCCAAACATTCAGAGGTCCAGCAGGCCAACCTAAAAGCAATGGGAGATGCTGA AATTAAAGATGGAGAAAGATTGCCACTGGCAGTAAAGGATATGGGCAGTTGTGAAATATA CCCTCAGACTATTCAGCACAATCCTAATGGGCGGTTTGTTGTGGTGTGTGGTGATGGCGA GTATATCATCTATACGGCAATGGCCTTAAGAAACAAGAGCTTTGGGTCTGCCCAGGAGTT TGCGTGGGCCCACGATTCTTCAGAATATGCGATCAGAGAGAGCAACAGTGTTGTAAAGAT ATTTAAGAACTTTAAGGAAAAAAAATCATTTAAACCAGATTTTGGAGCTGAAAGTATCTA TGGAGGCTTCTTACTGGGAGTGAGATCTGTCAATGGCTTAGCTTTCTACGATTGGGACAA TACAGAGCTCAT |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 96-250, gnl|bosTau2|chr1 (33321452-33321606) | |
| 96-250, gnl|canFam2|chr23 (38605132-38605319) | |
| 96-250, gnl|danRer3|chr2 (30513263-30513429) | |
| 96-250, gnl|dasNov1|scaffold_6100 (85544-85358) | |
| 96-250, gnl|echTel1|scaffold_172612 (2786-2600) | |
| 96-250, gnl|fr1|chrUn (74781673-74781826) | |
| 96-250, gnl|galGal2|chr9 (7759939-7759774) | |
| 96-250, gnl|hg17|chr3 (140577007-140577194) | |
| 96-250, gnl|Hg17|chr3 (140577162-140577008) | |
| 96-250, gnl|loxAfr1|scaffold_7237 (44020-43833) | |
| 96-250, gnl|mm7|chr9 (98215149-98214969) | |
| 96-250, gnl|Mm7|chr9 (98214992-98215146) | |
| 96-250, gnl|monDom2|scaffold_24 (34876689-34876852) | |
| 96-250, gnl|oryCun1|scaffold_191121 (29586-29778) | |
| 96-250, gnl|panTro1|chr2 (143099892-143100079) | |
| 96-250, gnl|rheMac2|chr2 (148451015-148450828) | |
| 96-250, gnl|tetNig1|chr15 (4188915-4188748) | |
| 96-250, gnl|xenTro1|scaffold_108 (1091456-1091278) | |
| 350-493, gnl|bosTau2|chr1 (33323308-33323451) | |
| 350-493, gnl|canFam2|chr23 (38603201-38603372) | |
| 350-493, gnl|danRer3|chr2 (30510770-30510935) | |
| 350-493, gnl|echTel1|scaffold_172612 (4479-4304) | |
| 350-493, gnl|fr1|chrUn (74781163-74781319) | |
| 350-493, gnl|galGal2|chr9 (7761378-7761219) | |
| 350-493, gnl|hg17|chr3 (140575195-140575361) | |
| 350-493, gnl|Hg17|chr3 (140575349-140575206) | |
| 350-493, gnl|loxAfr1|scaffold_7237 (45823-45663) | |
| 350-493, gnl|mm7|chr9 (98218678-98218511) | |
| 350-493, gnl|Mm7|chr9 (98218522-98218665) | |
| 350-493, gnl|monDom2|scaffold_24 (34872562-34872734) | |
| 350-493, gnl|panTro1|chr2 (143098000-143098166) | |
| 350-493, gnl|rheMac2|chr2 (148452812-148452646) | |
| 350-493, gnl|tetNig1|chr15 (4189395-4189236) | |
| 350-493, gnl|xenTro1|scaffold_108 (1092020-1091853) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-250, gnl|bosTau2|chr1 (33321452-33321606) | |
| 96-250, gnl|canFam2|chr23 (38605132-38605319) | |
| 96-250, gnl|danRer3|chr2 (30513263-30513429) | |
| 96-250, gnl|dasNov1|scaffold_6100 (85544-85358) | |
| 96-250, gnl|echTel1|scaffold_172612 (2786-2600) | |
| 96-250, gnl|fr1|chrUn (74781673-74781826) | |
| 96-250, gnl|galGal2|chr9 (7759939-7759774) | |
| 96-250, gnl|hg17|chr3 (140577007-140577194) | |
| 96-250, gnl|Hg17|chr3 (140577162-140577008) | |
| 96-250, gnl|loxAfr1|scaffold_7237 (44020-43833) | |
| 96-250, gnl|mm7|chr9 (98215149-98214969) | |
| 96-250, gnl|Mm7|chr9 (98214992-98215146) | |
| 96-250, gnl|monDom2|scaffold_24 (34876689-34876852) | |
| 96-250, gnl|oryCun1|scaffold_191121 (29586-29778) | |
| 96-250, gnl|panTro1|chr2 (143099892-143100079) | |
| 96-250, gnl|rheMac2|chr2 (148451015-148450828) | |
| 96-250, gnl|tetNig1|chr15 (4188915-4188748) | |
| 96-250, gnl|xenTro1|scaffold_108 (1091456-1091278) | |
| 350-493, gnl|bosTau2|chr1 (33323308-33323451) | |
| 350-493, gnl|canFam2|chr23 (38603201-38603372) | |
| 350-493, gnl|danRer3|chr2 (30510770-30510935) | |
| 350-493, gnl|echTel1|scaffold_172612 (4479-4304) | |
| 350-493, gnl|fr1|chrUn (74781163-74781319) | |
| 350-493, gnl|galGal2|chr9 (7761378-7761219) | |
| 350-493, gnl|hg17|chr3 (140575195-140575361) | |
| 350-493, gnl|Hg17|chr3 (140575349-140575206) | |
| 350-493, gnl|loxAfr1|scaffold_7237 (45823-45663) | |
| 350-493, gnl|mm7|chr9 (98218678-98218511) | |
| 350-493, gnl|Mm7|chr9 (98218522-98218665) | |
| 350-493, gnl|monDom2|scaffold_24 (34872562-34872734) | |
| 350-493, gnl|panTro1|chr2 (143098000-143098166) | |
| 350-493, gnl|rheMac2|chr2 (148452812-148452646) | |
| 350-493, gnl|tetNig1|chr15 (4189395-4189236) | |
| 350-493, gnl|xenTro1|scaffold_108 (1092020-1091853) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ece (0.229305) | |
| pty (0.142714) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| pty (0.142714) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |