Non-Coding RNA Search

Ss1.1-rpty638b_l2.5

Sequence:


               
               CTCAAAAGATGAATAAACCTCATGTATGCACTGAATGTGGGAAAGCCTTCGTCAAGAAGT
CCCGCCTCATCGATCATCAGAGAGTTCACACAGGAGAGAAACCTCATGGATGCAGTGTAT
GTGGGAAAGCCTTCTCTAGAAAGTCCAGGCTCAGTGAACATCAGAAGACCCATATAGGAG
AGAAATGGTATGCATGCACTGAATGTGACAAAGCTTTTCCCAAGAAATCACGGCTACTTC
TTCATCAGAAAACTCACACAGGAGAGAAGCCCTATGTATGTGACGAATGTGGAAAAGGCT
TCATCAAGAAGTCTCGGCTCATTAATCATCAGAGAGTTCACACGGGAGAAAAACCTCATG
GATGCAGTCTGTGTGACAAAGCATTCTCCAGGAAGTCCAGGCTCATTGAACATCAGAGAA
CTCATACAGGAGAAAAACCATATGAATGCACTGAATGTGACAAAGCCTTCCGCTGGAAAT
CACAGCTCAATGCACACCAGAAAACCCATACAGGCGAGAAATCATATGTATGCAGTGAAT
GTGGAAAAGGCTTCATCCAGAAGGGCAATCTCATTGTACATCAGCGAACCCATACTGGAG
AGAAACCCTATGTATGCAGTGAATGTGGAAAAGGCTTCATCCAGAAAGGCAACCTCCTTA
TACACCAACGAACTCACACTGGAGAGAAACCCTACGTATGCACTGAATGTGGGAAAGGCT
TCAGCCAGAAAACGTGCCTCATCTCACATCAGAGATTTCACACTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAAAGATGAATAAACCTCATGTATGCACTGAATGTGGGAAAGCCTTCGTCAAGAAGT
CCCGCCTCATCGATCATCAGAGAGTTCACACAGGAGAGAAACCTCATGGATGCAGTGTAT
GTGGGAAAGCCTTCTCTAGAAAGTCCAGGCTCAGTGAACATCAGAAGACCCATATAGGAG
AGAAATGGTATGCATGCACTGAATGTGACAAAGCTTTTCCCAAGAAATCACGGCTACTTC
TTCATCAGAAAACTCACACAGGAGAGAAGCCCTATGTATGTGACGAATGTGGAAAAGGCT
TCATCAAGAAGTCTCGGCTCATTAATCATCAGAGAGTTCACACGGGAGAAAAACCTCATG
GATGCAGTCTGTGTGACAAAGCATTCTCCAGGAAGTCCAGGCTCATTGAACATCAGAGAA
CTCATACAGGAGAAAAACCATATGAATGCACTGAATGTGACAAAGCCTTCCGCTGGAAAT
CACAGCTCAATGCACACCAGAAAACCCATACAGGCGAGAAATCATATGTATGCAGTGAAT
GTGGAAAAGGCTTCATCCAGAAGGGCAATCTCATTGTACATCAGCGAACCCATACTGGAG
AGAAACCCTATGTATGCAGTGAATGTGGAAAAGGCTTCATCCAGAAAGGCAACCTCCTTA
TACACCAACGAACTCACACTGGAGAGAAACCCTACGTATGCACTGAATGTGGGAAAGGCT
TCAGCCAGAAAACGTGCCTCATCTCACATCAGAGATTTCACACTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ZN615_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ZN615_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-479, - strand, RNAz p=0.916995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.916995

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-768, gnl|bosTau2|chr17 (22552273-22551506)
               


               
               15-767, gnl|bosTau2|chr10 (8996759-8996007)
               

               
               15-767, gnl|Hg17|chr19 (42818564-42817755)
               

               
               15-767, gnl|Mm7|chr2 (127310190-127309522)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr17 (22552273-22551506)
               


               
               15-767, gnl|bosTau2|chr10 (8996759-8996007)
               

               
               15-767, gnl|Hg17|chr19 (42818564-42817755)
               

               
               15-767, gnl|Mm7|chr2 (127310190-127309522)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	1-768, gnl\|bosTau2\|chr17 (22552273-22551506)

	15-767, gnl\|bosTau2\|chr10 (8996759-8996007)
	15-767, gnl\|Hg17\|chr19 (42818564-42817755)
	15-767, gnl\|Mm7\|chr2 (127310190-127309522)