Non-Coding RNA Search

Ss1.1-rpty639b_a21.5

Sequence:


               
               GTTTTATTTACAGTTTTAAAAGATCTTTTTGTCACTCTTGTCTGTAATTTTCTATGTACG
GTAATGTCCAGTTTTGAAAAACTTTATGATTTAAGATCTTAAATTATAAAATGTCAATTT
AGCTGACTAGTTCTCCCCTATACTTTTAAAAGAGAAATTGACAGTACAAGAGTTACTCAT
TGGGATTAGATTTATTAATCTAGTTACTAAGTTTGATATCTTAGGAAGGAGGTAATGGGT
TTTTTTTAATGATGGATAAACTTGTGCTGGTGTTTTGGATCTTATGATGCTGAGCATGTT
CTGCACTGGTGCTAATGTTTAACATAACTTTATATTTACAAACATACCTGCTACCCAGAG
GCAAGTAATCATTTAGTCCATATGGACTATTGACCCCTCTTGAGATTGCAACATACACAC
TCCTAAACACACATACACAGTGTGTTTAACTTGTATCTTGTTTCTGGACATGAACATGTT
ATAAACTTCTTGAGTTCTAGCAACATACAGAAAACACCTGCTATTAAAAACACTTCGCAA
GTTCTTATCGTCAGCCATTGCTGGCATTCTGTCACTAGAGAAAACAGCAATATCTGATAT
GTTGCAAGCTTTCAAGATAGCCTGGATTTTAAAAGTTGGTCCATTAGTTGTATCTGATGG
ATGTAAATTTGCCTCCTAGTTCACTTTGTGTTAAGAGCTAAAACTGTGAACCTAACTTTC
TCTTATTGGTGGGTAATAACTGAAAATAAAGATTTTATTTTCATGCTCACTTCTTAAAAA
AGTCATAAAAACAAATAGGAGCCCATTTATCGTCATGTGTTTTCTGACCTACGTGTGCAC
CCCCAAGGTAATGCTCAATATTTCCTTATACTTAGGTTTTATTTATGCAGGGGTGTTGAT
TAAACCAGGCTATCAAATAATATTTGGGAGGGATACCTATTTAATAATAAATAACTAGAA
AACTTAATTATTGTAAAGTGAATGGCAGGAACTGACTTGACAATTGGTATTTCTTTTAGT
AAATCATGTTTTGAGGGTAAAGGTTAATCATACCGAATATCAGAGTTTTTTGGTAAAATC
CTTTAATGGATACAGATACCTAAATGATGGCTGATAGGATGTTTTAAGTTTTTATGTTGA
TGCTTTTAAATGGAAATAATGTCAGAGTTATATATTTTTTATTAAGGTATTTTCAGGTTG
CATTGACAGGACTGGGATAAGGTCTCTTTATAGTTAAATATTTTTGAGACTCTGTGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTATTTACAGTTTTAAAAGATCTTTTTGTCACTCTTGTCTGTAATTTTCTATGTACG
GTAATGTCCAGTTTTGAAAAACTTTATGATTTAAGATCTTAAATTATAAAATGTCAATTT
AGCTGACTAGTTCTCCCCTATACTTTTAAAAGAGAAATTGACAGTACAAGAGTTACTCAT
TGGGATTAGATTTATTAATCTAGTTACTAAGTTTGATATCTTAGGAAGGAGGTAATGGGT
TTTTTTTAATGATGGATAAACTTGTGCTGGTGTTTTGGATCTTATGATGCTGAGCATGTT
CTGCACTGGTGCTAATGTTTAACATAACTTTATATTTACAAACATACCTGCTACCCAGAG
GCAAGTAATCATTTAGTCCATATGGACTATTGACCCCTCTTGAGATTGCAACATACACAC
TCCTAAACACACATACACAGTGTGTTTAACTTGTATCTTGTTTCTGGACATGAACATGTT
ATAAACTTCTTGAGTTCTAGCAACATACAGAAAACACCTGCTATTAAAAACACTTCGCAA
GTTCTTATCGTCAGCCATTGCTGGCATTCTGTCACTAGAGAAAACAGCAATATCTGATAT
GTTGCAAGCTTTCAAGATAGCCTGGATTTTAAAAGTTGGTCCATTAGTTGTATCTGATGG
ATGTAAATTTGCCTCCTAGTTCACTTTGTGTTAAGAGCTAAAACTGTGAACCTAACTTTC
TCTTATTGGTGGGTAATAACTGAAAATAAAGATTTTATTTTCATGCTCACTTCTTAAAAA
AGTCATAAAAACAAATAGGAGCCCATTTATCGTCATGTGTTTTCTGACCTACGTGTGCAC
CCCCAAGGTAATGCTCAATATTTCCTTATACTTAGGTTTTATTTATGCAGGGGTGTTGAT
TAAACCAGGCTATCAAATAATATTTGGGAGGGATACCTATTTAATAATAAATAACTAGAA
AACTTAATTATTGTAAAGTGAATGGCAGGAACTGACTTGACAATTGGTATTTCTTTTAGT
AAATCATGTTTTGAGGGTAAAGGTTAATCATACCGAATATCAGAGTTTTTTGGTAAAATC
CTTTAATGGATACAGATACCTAAATGATGGCTGATAGGATGTTTTAAGTTTTTATGTTGA
TGCTTTTAAATGGAAATAATGTCAGAGTTATATATTTTTTATTAAGGTATTTTCAGGTTG
CATTGACAGGACTGGGATAAGGTCTCTTTATAGTTAAATATTTTTGAGACTCTGTGGAGC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               454-1023, gnl|bosTau2|chr11 (31069817-31069252)
               

               
               454-1023, gnl|Hg17|chr1 (67589065-67588522)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               454-1023, gnl|bosTau2|chr11 (31069817-31069252)
               

               
               454-1023, gnl|Hg17|chr1 (67589065-67588522)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	454-1023, gnl\|bosTau2\|chr11 (31069817-31069252)
	454-1023, gnl\|Hg17\|chr1 (67589065-67588522)

	sme (0.305437)
	pty (0.285429)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	fty (0.17584)
	fhi (0.169578)
	eli (0.151814)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	nca (0.136874)
	kid (0.129735)
	thg (0.126791)
	eru (0.120048)
	nbm (0.0993246)
	ldo (0.0970026)