Non-Coding RNA Search

Ss1.1-rpty640b_l8.5

Sequence:


               
               GTCTCCATGTAAGGCCTAAGGGTGAGAGAGTGAGAGAAAGAGAGAGGCAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGAGGAAAGGAGAAGTGTAGAGAAGGCGACACAGAGTAGCTGGTGCTCAATCCAGTAT
GTGATTTGCCTCCAGCACCGTATACAGGATCCCATCCACTTGTTCTGAGTCAAACCCGAT
CTCACGAAGCTCCAAGTGAGGGAGGACAGAAGTAAGGAGATAGCTGACGTGGATACGCAG
CCGCGTAAGCTTTGCCAAAGCCCTGTATGAAGGAGTGAGGGACAGCCTCGTGCCGAATTC
GGCACGAGGAAGAACCCTCCCAAAGTGCTGTTCCTCCTGGGAGCAGATGGAGGTTGTATC
ACTCGACAAGATTTGCCAAAGGATTGTTTCATTATTTATCAAGGACATCATGGCGATGTT
GGAGCTCCTATGGCTGACGTTATTCTCCCTGGCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCATGTAAGGCCTAAGGGTGAGAGAGTGAGAGAAAGAGAGAGGCAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGAGGAAAGGAGAAGTGTAGAGAAGGCGACACAGAGTAGCTGGTGCTCAATCCAGTAT
GTGATTTGCCTCCAGCACCGTATACAGGATCCCATCCACTTGTTCTGAGTCAAACCCGAT
CTCACGAAGCTCCAAGTGAGGGAGGACAGAAGTAAGGAGATAGCTGACGTGGATACGCAG
CCGCGTAAGCTTTGCCAAAGCCCTGTATGAAGGAGTGAGGGACAGCCTCGTGCCGAATTC
GGCACGAGGAAGAACCCTCCCAAAGTGCTGTTCCTCCTGGGAGCAGATGGAGGTTGTATC
ACTCGACAAGATTTGCCAAAGGATTGTTTCATTATTTATCAAGGACATCATGGCGATGTT
GGAGCTCCTATGGCTGACGTTATTCTCCCTGGCGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-345, - strand, RNAz p=0.726588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-345, - strand, RNAz p=0.726588

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               68-345, gnl|bosTau2|chrX (16958916-16959193)
               

               
               68-345, gnl|canFam2|chrX (83564981-83565427)
               

               
               68-345, gnl|echTel1|scaffold_321388 (86547-86114)
               

               
               68-345, gnl|hg17|chrX (105990597-105991009)
               

               
               68-345, gnl|Hg17|chrX (105990741-105991034)
               

               
               68-345, gnl|mm7|chrX (134541594-134542043)
               

               
               68-345, gnl|Mm7|chrX (134541747-134542071)
               

               
               68-345, gnl|monDom2|scaffold_154 (568899-568532)
               

               
               68-345, gnl|oryCun1|scaffold_198369 (40838-41290)
               

               
               68-345, gnl|panTro1|chrX (109550366-109550772)
               

               
               68-345, gnl|rheMac2|chrX (105691116-105691515)
               

               
               68-345, gnl|rn3|chrX (127633279-127633707)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-345, gnl|bosTau2|chrX (16958916-16959193)
               

               
               68-345, gnl|canFam2|chrX (83564981-83565427)
               

               
               68-345, gnl|echTel1|scaffold_321388 (86547-86114)
               

               
               68-345, gnl|hg17|chrX (105990597-105991009)
               

               
               68-345, gnl|Hg17|chrX (105990741-105991034)
               

               
               68-345, gnl|mm7|chrX (134541594-134542043)
               

               
               68-345, gnl|Mm7|chrX (134541747-134542071)
               

               
               68-345, gnl|monDom2|scaffold_154 (568899-568532)
               

               
               68-345, gnl|oryCun1|scaffold_198369 (40838-41290)
               

               
               68-345, gnl|panTro1|chrX (109550366-109550772)
               

               
               68-345, gnl|rheMac2|chrX (105691116-105691515)
               

               
               68-345, gnl|rn3|chrX (127633279-127633707)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

	68-345, gnl\|bosTau2\|chrX (16958916-16959193)
	68-345, gnl\|canFam2\|chrX (83564981-83565427)
	68-345, gnl\|echTel1\|scaffold_321388 (86547-86114)
	68-345, gnl\|hg17\|chrX (105990597-105991009)
	68-345, gnl\|Hg17\|chrX (105990741-105991034)
	68-345, gnl\|mm7\|chrX (134541594-134542043)
	68-345, gnl\|Mm7\|chrX (134541747-134542071)
	68-345, gnl\|monDom2\|scaffold_154 (568899-568532)
	68-345, gnl\|oryCun1\|scaffold_198369 (40838-41290)
	68-345, gnl\|panTro1\|chrX (109550366-109550772)
	68-345, gnl\|rheMac2\|chrX (105691116-105691515)
	68-345, gnl\|rn3\|chrX (127633279-127633707)