Non-Coding RNA Search

Ss1.1-rrec02_l19.5

Sequence:


               
               TTTAAATAAACTTTGAATGAATGACTCCTTCAAGTTAGAGATATCTTCTCAAAAAAATGC
ATCAATTTTCTATCAATTTTACAAGTGATGAGCATTTTTCTGTGATGAGGTTTTTAACCA
TTATTCAGGGTGGCCTTTTTTTTTTTTTTTTTAACCTAATAAGATTTACTATGTATATTT
TATACAGAATTGCATTACAAATATGTTTTTAATTGTATTCTTTTCTTTTTTCTTTTTTTG
TAGTCTTTATGTGCCATGCCAATTCTTTTTATATTACATAGAGGTTTTTTTCTCAAATTA
CTCACCAGGGGACTAAGGCAGTTGACAGTCAGAATGGTTGGAGTTTTGGTGTTCTAAGAA
AAATTTATTTTGCATAAGCATGTATGTGGTCAGTTCATTTTATGTGAATGCAGCCTGAAA
TGAATATCAGGTATCATGCTTGCTTATTAGTACCTGTACATTTACTTTTAAAATTTTGTT
TTGATTTTTGTCATGTAGAATACTGCCTTGGTATAATCTGTATTTGTGTACCTTTTTTTA
CTTTAAAAATCTTTAAATAAAATGTTTAATACTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATAAACTTTGAATGAATGACTCCTTCAAGTTAGAGATATCTTCTCAAAAAAATGC
ATCAATTTTCTATCAATTTTACAAGTGATGAGCATTTTTCTGTGATGAGGTTTTTAACCA
TTATTCAGGGTGGCCTTTTTTTTTTTTTTTTTAACCTAATAAGATTTACTATGTATATTT
TATACAGAATTGCATTACAAATATGTTTTTAATTGTATTCTTTTCTTTTTTCTTTTTTTG
TAGTCTTTATGTGCCATGCCAATTCTTTTTATATTACATAGAGGTTTTTTTCTCAAATTA
CTCACCAGGGGACTAAGGCAGTTGACAGTCAGAATGGTTGGAGTTTTGGTGTTCTAAGAA
AAATTTATTTTGCATAAGCATGTATGTGGTCAGTTCATTTTATGTGAATGCAGCCTGAAA
TGAATATCAGGTATCATGCTTGCTTATTAGTACCTGTACATTTACTTTTAAAATTTTGTT
TTGATTTTTGTCATGTAGAATACTGCCTTGGTATAATCTGTATTTGTGTACCTTTTTTTA
CTTTAAAAATCTTTAAATAAAATGTTTAATACTCAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-575, gnl|bosTau2|chr1 (62718875-62718295)
               

               
               1-575, gnl|Hg17|chr3 (171505894-171506467)
               

               
               1-575, gnl|Mm7|chr3 (30864183-30864744)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr1 (62718875-62718295)
               

               
               1-575, gnl|Hg17|chr3 (171505894-171506467)
               

               
               1-575, gnl|Mm7|chr3 (30864183-30864744)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               lyg (0.133103)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               lyg (0.133103)

	1-575, gnl\|bosTau2\|chr1 (62718875-62718295)
	1-575, gnl\|Hg17\|chr3 (171505894-171506467)
	1-575, gnl\|Mm7\|chr3 (30864183-30864744)

	sag (0.36543)
	rec (0.346141)
	fce (0.271592)
	kid (0.259471)
	fcc (0.197785)
	col (0.195008)
	lyg (0.133103)