Non-Coding RNA Search

Ss1.1-rrec02_p9.5

Sequence:


               
               TTCATACAGCTCGAGGAAGATTTGAAAGAGGACGATGAATCATTAAGAAATGGCAACAAA
GTCAACAGAATGAAAGTTGCAGTCTCTGATGGAAACGGGCCCTCCGGGGGCGAGCTACCC
CAGAGTGAACTCATCCTGTATTTATCAGCTTGCAAATTCTTGGACACAGCACTTTCTTTT
CCACCTGACAAAATGCCCTTATTTCAAATTTACAGGTGGGCATTCGTTCCAGAAGTGGAC
ACAGAGGGCCCTGCCTGCCCATCAGATCTAGAGGAAAATCACCAAGAATACAAACCGCAC
ATCGTCAGGATTCTAGAACTTCTAAAATTAAAATATGGGGAAATCAGCAGCTCAGATGAG
ATCTCCATGAAGAGTGAACTCCCTCTTCTGCGCCAGCGTTCTCTTTCCAGCATTAGGCAA
TTGATGCCCTTCTTCACGACGCTCAATTGTGCTTTTAAATCCCAAAGTAAATTGCCTGCA
GACACCCGGGCCCCTCCACTCTTCGAGTTTCCTGTCGAAGAGACCCCAAGGGTCTTGAAG
CAACTGGAAGAATGTGTCGAATATGATTTTTTGGAACATCTGGAATGTTAGCCTTGTAAG
CCAGAACTCGCTTAATCCATTTACTGAGACTCCGGCAAACACCAGGATGTACTCCAAACA
AGAAGGGAGCCAGCATAGTGCTTTTAAACAAGTCTATTTCAATTTTGAAAGTAAATTTCA
GATCATTTTTCTGGTGGGCAACAAAACACACTTCCTGAATGCCTTGTAATATATTCAGAT
CTGATTTTATGTTTCTTCCTCAATTTATGTAAAGAAAATAAAATTAATTATATCATCTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATACAGCTCGAGGAAGATTTGAAAGAGGACGATGAATCATTAAGAAATGGCAACAAA
GTCAACAGAATGAAAGTTGCAGTCTCTGATGGAAACGGGCCCTCCGGGGGCGAGCTACCC
CAGAGTGAACTCATCCTGTATTTATCAGCTTGCAAATTCTTGGACACAGCACTTTCTTTT
CCACCTGACAAAATGCCCTTATTTCAAATTTACAGGTGGGCATTCGTTCCAGAAGTGGAC
ACAGAGGGCCCTGCCTGCCCATCAGATCTAGAGGAAAATCACCAAGAATACAAACCGCAC
ATCGTCAGGATTCTAGAACTTCTAAAATTAAAATATGGGGAAATCAGCAGCTCAGATGAG
ATCTCCATGAAGAGTGAACTCCCTCTTCTGCGCCAGCGTTCTCTTTCCAGCATTAGGCAA
TTGATGCCCTTCTTCACGACGCTCAATTGTGCTTTTAAATCCCAAAGTAAATTGCCTGCA
GACACCCGGGCCCCTCCACTCTTCGAGTTTCCTGTCGAAGAGACCCCAAGGGTCTTGAAG
CAACTGGAAGAATGTGTCGAATATGATTTTTTGGAACATCTGGAATGTTAGCCTTGTAAG
CCAGAACTCGCTTAATCCATTTACTGAGACTCCGGCAAACACCAGGATGTACTCCAAACA
AGAAGGGAGCCAGCATAGTGCTTTTAAACAAGTCTATTTCAATTTTGAAAGTAAATTTCA
GATCATTTTTCTGGTGGGCAACAAAACACACTTCCTGAATGCCTTGTAATATATTCAGAT
CTGATTTTATGTTTCTTCCTCAATTTATGTAAAGAAAATAAAATTAATTATATCATCTAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61825277|ref|XP_591490.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825277|ref|XP_591490.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               46-212, gnl|bosTau2|chr1 (96299309-96299475)
               

               
               46-212, gnl|Hg17|chr21 (36583211-36583377)
               

               
               46-212, gnl|Mm7|chr16 (93871271-93871437)
               


               
               339-840, gnl|bosTau2|chr1 (96302277-96302787)
               

               
               339-840, gnl|Hg17|chr21 (36587487-36588290)
               

               
               339-840, gnl|Mm7|chr16 (93874644-93875132)
               


               
               657-793, gnl|bosTau2|chr18 (48826244-48826108)
               

               
               657-793, gnl|Hg17|chr21 (36587805-36588257)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-212, gnl|bosTau2|chr1 (96299309-96299475)
               

               
               46-212, gnl|Hg17|chr21 (36583211-36583377)
               

               
               46-212, gnl|Mm7|chr16 (93871271-93871437)
               


               
               339-840, gnl|bosTau2|chr1 (96302277-96302787)
               

               
               339-840, gnl|Hg17|chr21 (36587487-36588290)
               

               
               339-840, gnl|Mm7|chr16 (93874644-93875132)
               


               
               657-793, gnl|bosTau2|chr18 (48826244-48826108)
               

               
               657-793, gnl|Hg17|chr21 (36587805-36588257)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pro (1.5361)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               csk (0.281492)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               cmu (0.372787)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               csk (0.281492)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

	46-212, gnl\|bosTau2\|chr1 (96299309-96299475)
	46-212, gnl\|Hg17\|chr21 (36583211-36583377)
	46-212, gnl\|Mm7\|chr16 (93871271-93871437)

	339-840, gnl\|bosTau2\|chr1 (96302277-96302787)
	339-840, gnl\|Hg17\|chr21 (36587487-36588290)
	339-840, gnl\|Mm7\|chr16 (93874644-93875132)

	657-793, gnl\|bosTau2\|chr18 (48826244-48826108)
	657-793, gnl\|Hg17\|chr21 (36587805-36588257)

	pro (1.5361)
	cmu (0.372787)
	sin (0.349895)
	rec (0.346141)
	csk (0.281492)
	hea (0.204499)
	sag (0.182715)
	cut (0.169924)
	isp (0.150376)
	lyg (0.133103)
	spc (0.113366)