Non-Coding RNA Search

Ss1.1-rrec06_f7.5

Sequence:


               
               TTGAAATAAATTAGATCTTCTTTTAATATGAAAGTCCTTAGGTAAAAATAAAAACAGTGT
ATCCTAGAAATCATTCTCCAGCTTTATGATTGGAAAATCTTACCAGGTGACCCCTCTCCA
CCCTAATAATGGGGTAGGGGAAGGTTCCAGCAGATTTCAGGCCACCTTAGTTTATGTTGG
TCATTTTCACACCAATGCATAAAATCAAGAAGGTCATGAATACTGAAAGACATTTAAGGT
GTTTGCTTGTGTTCTCTTCAGTCAGAATTGAAAAGTAAAGTACTTGATCTCTATTTCCTG
CCATTGACCAAATAGTAAAGAAAACCAAACAAACTCAAAGGGAAAAATGGTTCCTTTAAT
CTAGCAATTTACGTATTTGCTCTTGATATGGGAATTTTATTAATTCCTGTTTATGAAGCT
CATGTCACAAAATGGTATGTAATAACAGTAGCTTTTACTTGGGGGTAAATCTTTTCTCTT
ATTTTAATGAATGAGTATAAATGACCGACCAGAGGTAAACAGCATGGCATCTGTCATTGC
CACATTGTTAGTGAATGTGTTATTCAGGTTTGCTATTCTTTGAAACACAAAATATTACTA
ATTTTCCTAACTTCGTTTCAATATTAGGAGTATTGTGTGTGTGCGCACGTGTGTGACCAC
TAAGCTTGGTCATACTATAAAGCTGTTACCTCTTTACAAAATCTACATCTGAAGATAGGA
AGAGAAAATGGGCCTGGTGTAACAGAGGATTCTCTTTTTATGCTTCTTACTCTGATCACA
GGAAAAAACCCAAGTGCTCTCTGGATGTGTTGGTAAACATTTTATGCTTTGCATTGATGC
TTGGAAATGTATGAACAGAATGAGACGAGACAATCAGTTCAAATCAGAAATGAGAAGTGT
TAACATTTAATGGCCTTGTTTTGCTGTAGCAATAAAATGACCAAGTGCAATGAATGACTT
GATTTAATAAAATCATCTTTTAAAAGTTGCTGCTATGAATATTTTTAGCCATAAAATTTT
ACCCTTGTTATAGCCTGACTTGCCTTCAGTAACTATTGTGTAATGCAGTTGGTATTGTGA
TATTCTAACATTCCAAAAAATAATAATATATATTTATGGGGAATTAAAAACAGTATACTT
CACTGACTTGTTTACAGGTGCTGTAAAAAAGCATGCTTCTCCCTCAAAGAGAAAAATTAA
TAAAGAATAGTATTGCCAGTTGTGTCCATCTTTATTGATGATTTTTCATTAACTTCAGCA
TATGCTTATTGCAGAGTATGATGAAAACTATTTTATATGACTGAGTTTTCCAAAGAAAAG
AAACAATGTAAATAGTAAAATGAAAACATTAAAAGTTCTAGACCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAATAAATTAGATCTTCTTTTAATATGAAAGTCCTTAGGTAAAAATAAAAACAGTGT
ATCCTAGAAATCATTCTCCAGCTTTATGATTGGAAAATCTTACCAGGTGACCCCTCTCCA
CCCTAATAATGGGGTAGGGGAAGGTTCCAGCAGATTTCAGGCCACCTTAGTTTATGTTGG
TCATTTTCACACCAATGCATAAAATCAAGAAGGTCATGAATACTGAAAGACATTTAAGGT
GTTTGCTTGTGTTCTCTTCAGTCAGAATTGAAAAGTAAAGTACTTGATCTCTATTTCCTG
CCATTGACCAAATAGTAAAGAAAACCAAACAAACTCAAAGGGAAAAATGGTTCCTTTAAT
CTAGCAATTTACGTATTTGCTCTTGATATGGGAATTTTATTAATTCCTGTTTATGAAGCT
CATGTCACAAAATGGTATGTAATAACAGTAGCTTTTACTTGGGGGTAAATCTTTTCTCTT
ATTTTAATGAATGAGTATAAATGACCGACCAGAGGTAAACAGCATGGCATCTGTCATTGC
CACATTGTTAGTGAATGTGTTATTCAGGTTTGCTATTCTTTGAAACACAAAATATTACTA
ATTTTCCTAACTTCGTTTCAATATTAGGAGTATTGTGTGTGTGCGCACGTGTGTGACCAC
TAAGCTTGGTCATACTATAAAGCTGTTACCTCTTTACAAAATCTACATCTGAAGATAGGA
AGAGAAAATGGGCCTGGTGTAACAGAGGATTCTCTTTTTATGCTTCTTACTCTGATCACA
GGAAAAAACCCAAGTGCTCTCTGGATGTGTTGGTAAACATTTTATGCTTTGCATTGATGC
TTGGAAATGTATGAACAGAATGAGACGAGACAATCAGTTCAAATCAGAAATGAGAAGTGT
TAACATTTAATGGCCTTGTTTTGCTGTAGCAATAAAATGACCAAGTGCAATGAATGACTT
GATTTAATAAAATCATCTTTTAAAAGTTGCTGCTATGAATATTTTTAGCCATAAAATTTT
ACCCTTGTTATAGCCTGACTTGCCTTCAGTAACTATTGTGTAATGCAGTTGGTATTGTGA
TATTCTAACATTCCAAAAAATAATAATATATATTTATGGGGAATTAAAAACAGTATACTT
CACTGACTTGTTTACAGGTGCTGTAAAAAAGCATGCTTCTCCCTCAAAGAGAAAAATTAA
TAAAGAATAGTATTGCCAGTTGTGTCCATCTTTATTGATGATTTTTCATTAACTTCAGCA
TATGCTTATTGCAGAGTATGATGAAAACTATTTTATATGACTGAGTTTTCCAAAGAAAAG
AAACAATGTAAATAGTAAAATGAAAACATTAAAAGTTCTAGACCTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               54-209, + strand, RNAz p=0.999411

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-209, + strand, RNAz p=0.999411

Similar Transcript(s): 1 entry(ies)

More info

Similar Transcript(s): 1 entry(ies)

Help | Less info


               
               54-209, UMC-pd3end3-005-c01 Endometrium gilt D3 of estrous cycle pd3end Sus 
(gb|CO988679.1|), blast E-value=0, identity=98.73%

Similar Transcript(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               54-209, UMC-pd3end3-005-c01 Endometrium gilt D3 of estrous cycle pd3end Sus 
(gb|CO988679.1|), blast E-value=0, identity=98.73%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_012120, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012120, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               15-604, gnl|bosTau2|chr23 (40603514-40604099)
               

               
               15-604, gnl|Hg17|chr6 (47701686-47702259)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-604, gnl|bosTau2|chr23 (40603514-40604099)
               

               
               15-604, gnl|Hg17|chr6 (47701686-47702259)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               lin (0.873617)
               

               
               sin (0.524843)
               

               
               mga (0.480615)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cly (0.120642)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.873617)
               

               
               sin (0.524843)
               

               
               mga (0.480615)
               

               
               kid (0.389206)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cly (0.120642)

	15-604, gnl\|bosTau2\|chr23 (40603514-40604099)
	15-604, gnl\|Hg17\|chr6 (47701686-47702259)

	lin (0.873617)
	sin (0.524843)
	mga (0.480615)
	kid (0.389206)
	sag (0.36543)
	rec (0.346141)
	ski (0.29347)
	liv (0.292569)
	spl (0.286369)
	ova (0.258264)
	tra (0.246184)
	mas (0.210305)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	lyg (0.133103)
	ret (0.128733)
	thg (0.126791)
	cly (0.120642)