Non-Coding RNA Search

Ss1.1-rrec07_d20.5

Sequence:


               
               TCCCAGGTTGTAGCAGCAGTGGAAGTTGCCCTCAAGGAAGTGGTATTTTACATTACGCTC
ATGGAGAGAGTCAGCAAAATCACCTATTAAAGCAAGGAAGAAGCTCCACGGGCAGTGGTC
TTAGCAGTGCGAAACGTCCTAGTCAGGAAGAGGACACGCAGAGCATCATCGGTCCTAAAG
TCCAGCGACAGAGCACTAATTAGAAAACATTCAGGAGAAATACTGTTGCAGCTGAAATTG
GTGGGGAATTCAATACTTTTTCAGTTTAATTATTTTAAAACATTCTTCATTGATGGAAAG
CAATTACATATTGAAATGCATTATTTCTAATAACATTTCTGTGGTTTTTAACTTTTTAAT
GAATTTGACAGGACAAATGGTAATTTGTATATAAAGAACTTGTTAAAAGAATTTGCTTAA
TGTAAATATAGTTACAATTAGAATAGACCCATCAATATATTTTTGATAATTTTTCATGTA
TGGTAGAAGTTAAAGTGAAAAGTTGATATTCTGATATCAAAATTTTGAGAGTCAATGTGG
GAAAATAGGAAGTTTTTAGACTTTCTTAAAAGACTTTGTTAAAATTTTAGGACAAAATTT
TTCTTGAAATCATTGTTTTGTCTAACTTCATACTCTTTGATAATAATGTTTTAGAAAAAT
ATGTGTAATCAAAATTGGTAGTTATAGCCTCTGTTAACACAGACTATATATGTTTTAAAG
CTTTGTGTATGCTTGTTTTGACCCAAATTTGTGCCAGTATCATGTGTTAAGTTCTTGTTT
CCCTTTCTTTGTTCATTTGTAGCTAAAGTGACTTTGTTATTAAAGTATATGCACATATGG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAGGTTGTAGCAGCAGTGGAAGTTGCCCTCAAGGAAGTGGTATTTTACATTACGCTC
ATGGAGAGAGTCAGCAAAATCACCTATTAAAGCAAGGAAGAAGCTCCACGGGCAGTGGTC
TTAGCAGTGCGAAACGTCCTAGTCAGGAAGAGGACACGCAGAGCATCATCGGTCCTAAAG
TCCAGCGACAGAGCACTAATTAGAAAACATTCAGGAGAAATACTGTTGCAGCTGAAATTG
GTGGGGAATTCAATACTTTTTCAGTTTAATTATTTTAAAACATTCTTCATTGATGGAAAG
CAATTACATATTGAAATGCATTATTTCTAATAACATTTCTGTGGTTTTTAACTTTTTAAT
GAATTTGACAGGACAAATGGTAATTTGTATATAAAGAACTTGTTAAAAGAATTTGCTTAA
TGTAAATATAGTTACAATTAGAATAGACCCATCAATATATTTTTGATAATTTTTCATGTA
TGGTAGAAGTTAAAGTGAAAAGTTGATATTCTGATATCAAAATTTTGAGAGTCAATGTGG
GAAAATAGGAAGTTTTTAGACTTTCTTAAAAGACTTTGTTAAAATTTTAGGACAAAATTT
TTCTTGAAATCATTGTTTTGTCTAACTTCATACTCTTTGATAATAATGTTTTAGAAAAAT
ATGTGTAATCAAAATTGGTAGTTATAGCCTCTGTTAACACAGACTATATATGTTTTAAAG
CTTTGTGTATGCTTGTTTTGACCCAAATTTGTGCCAGTATCATGTGTTAAGTTCTTGTTT
CCCTTTCTTTGTTCATTTGTAGCTAAAGTGACTTTGTTATTAAAGTATATGCACATATGG
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               202-842, gnl|bosTau2|chr5 (40843523-40844179)
               

               
               202-842, gnl|Hg17|chr12 (105888248-105887609)
               

               
               202-842, gnl|Mm7|chr10 (84673673-84673064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-842, gnl|bosTau2|chr5 (40843523-40844179)
               

               
               202-842, gnl|Hg17|chr12 (105888248-105887609)
               

               
               202-842, gnl|Mm7|chr10 (84673673-84673064)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               pan (0.471921)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.471921)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	202-842, gnl\|bosTau2\|chr5 (40843523-40844179)
	202-842, gnl\|Hg17\|chr12 (105888248-105887609)
	202-842, gnl\|Mm7\|chr10 (84673673-84673064)

	pan (0.471921)
	ret (0.257467)
	thg (0.253582)
	ece (0.229305)
	sag (0.182715)
	sto (0.179824)
	rec (0.17307)
	fco (0.157208)
	bfe (0.149858)
	kid (0.129735)
	tra (0.123092)
	eje (0.0988338)