Ss1.1-rrec07_f1.5
|
GGAAGATAGTGAGAACACAGCATTTCTAGGATGTACATGAGAAAATGAGTCAGTTTCTGG
AAATTGTTACCATTTTTGAAAATGAAGTCCATGAACAGGCTCTCAGGAGGGCTGTGAACT
TGTGAGATTCTGTACAAAATGTTTGTGGTGAAAGCTTATTTGTGGGAGAGTTTCCATGAT
ATTAAGAATCACTGGTGTAAGACCTAATTACAAGATGCAAAGTAAATCAATATGCATTTC
TAGATCTCTGTCCTTAGTGCTTGAGCAATGTTGTTGTTCAATGTTTTGTTGAAATATTTT
CTATCATTTTGTTCTATAGGGGTCATTTCTAAGAGTCTTGCAAAAATGATTTCATGATCT
TTTTAAAAGTTAAGCTCAGGCTGAATCACTTATAATTTTCTTAAGTATTGAATTACATGT
CTATATCTTATTGGGCTCTATCCTTATCCATTTATTTTAGTTCAGAAACATGACACTTTA
CATGAATCATACCTTAATAATGTTACATTTCTGTAATTTTAATAAAAATTCTTATCTATA
AAAATAAAGGTTTAAAATTAGCTCAATAGAAGTCATATTAAAGCATCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAGATAGTGAGAACACAGCATTTCTAGGATGTACATGAGAAAATGAGTCAGTTTCTGG
AAATTGTTACCATTTTTGAAAATGAAGTCCATGAACAGGCTCTCAGGAGGGCTGTGAACT
TGTGAGATTCTGTACAAAATGTTTGTGGTGAAAGCTTATTTGTGGGAGAGTTTCCATGAT
ATTAAGAATCACTGGTGTAAGACCTAATTACAAGATGCAAAGTAAATCAATATGCATTTC
TAGATCTCTGTCCTTAGTGCTTGAGCAATGTTGTTGTTCAATGTTTTGTTGAAATATTTT
CTATCATTTTGTTCTATAGGGGTCATTTCTAAGAGTCTTGCAAAAATGATTTCATGATCT
TTTTAAAAGTTAAGCTCAGGCTGAATCACTTATAATTTTCTTAAGTATTGAATTACATGT
CTATATCTTATTGGGCTCTATCCTTATCCATTTATTTTAGTTCAGAAACATGACACTTTA
CATGAATCATACCTTAATAATGTTACATTTCTGTAATTTTAATAAAAATTCTTATCTATA
AAAATAAAGGTTTAAAATTAGCTCAATAGAAGTCATATTAAAGCATCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-149, gnl|bosTau2|chr22 (28518498-28518646) |
|
1-149, gnl|canFam2|chr20 (30386246-30386039) |
|
1-149, gnl|dasNov1|scaffold_9155 (10468-10662) |
|
1-149, gnl|echTel1|scaffold_10264 (2245-2079) |
|
1-149, gnl|hg17|chr3 (63794348-63794554) |
|
1-149, gnl|Hg17|chr3 (63794517-63794371) |
|
1-149, gnl|loxAfr1|scaffold_3102 (38750-38545) |
|
1-149, gnl|mm7|chr14 (11767683-11767861) |
|
1-149, gnl|Mm7|chr14 (11767824-11767657) |
|
1-149, gnl|monDom2|scaffold_5 (9994094-9994283) |
|
1-149, gnl|panTro1|chrUn_random (24497184-24496978) |
|
1-149, gnl|rheMac2|chr2 (72567608-72567403) |
|
1-149, gnl|rn3|chr15 (12827357-12827224) |
| |
|
209-588, gnl|bosTau2|chr22 (28518648-28519033) |
|
209-588, gnl|Hg17|chr3 (63794310-63793556) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-149, gnl|bosTau2|chr22 (28518498-28518646) |
|
1-149, gnl|canFam2|chr20 (30386246-30386039) |
|
1-149, gnl|dasNov1|scaffold_9155 (10468-10662) |
|
1-149, gnl|echTel1|scaffold_10264 (2245-2079) |
|
1-149, gnl|hg17|chr3 (63794348-63794554) |
|
1-149, gnl|Hg17|chr3 (63794517-63794371) |
|
1-149, gnl|loxAfr1|scaffold_3102 (38750-38545) |
|
1-149, gnl|mm7|chr14 (11767683-11767861) |
|
1-149, gnl|Mm7|chr14 (11767824-11767657) |
|
1-149, gnl|monDom2|scaffold_5 (9994094-9994283) |
|
1-149, gnl|panTro1|chrUn_random (24497184-24496978) |
|
1-149, gnl|rheMac2|chr2 (72567608-72567403) |
|
1-149, gnl|rn3|chr15 (12827357-12827224) |
| |
|
209-588, gnl|bosTau2|chr22 (28518648-28519033) |
|
209-588, gnl|Hg17|chr3 (63794310-63793556) |
|
mgp (0.230681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
kid (0.129735) |
|
mgp (0.230681) |
|
sag (0.182715) |
|
rec (0.17307) |
|
kid (0.129735) |
