Non-Coding RNA Search

Ss1.1-rrec07_j6.5

Sequence:


               
               GATGAGCCCGTCAACTCTATTCCCTGTGGGGAAGAACAAACCAATGGATAACTTTTGTCT
CATGTGTTCATTTATATATAATAATTAGCCTTTTGGGGGAATCAAAATGTTGGCTTTGAC
AATCACTGTTTATCCTGACTTTTTGTTTTGTTTTAATTTTTTCTTTATTTTTATCCTGAC
TTTGTAAAAAATCTGTTTAGTGAAATCACACCAGAAGGAAGAAGAATTACTAAGTTAGAT
CAAATTTTGCTAAATGGAAATAATATAACAATGGTAAGATACAGTAAAGCTATTTTATTT
AGATGTTAAGCCATTTTTATGGGGCAGGGATTACAGAACTAACTTGTCTAAATGCTTGTG
GCCCAGTGGTACTTAAAATGGGAAAGGGATGCTGGTGGTCAGGGCTCTAAAGCTGTTAAA
GATGACATTAGGCCTAAGATTAGTTTGTGATTATTAATCATTTATTTTACCAAGAGTCAT
TGTGGAGACATTAAGTATTGAGGGTGGTGGCATTGTAAAATAGCAGTGACTTGGAGAAAA
TGGGAATATGGGGGAGGAGCAAAGTGGTGTGGCTTTAGTCAATGGGGAGCTCTCAGTAGG
GGTTTTTATATTGTGTAGTAGTGATGATTTTAAGCTTTTTCCTTTTTTGCAGCTGGTTCC
TGGAGGAGAAGGACCTGAAGTATGAATGGATTTCTTCACTTATGCTAGATTCTGTTTTGT
CTTATGACAACAAAATGTAACTTTTTTTTAAACTTTTAATGAACATTTGGATTCTGTGAA
GCCAAGTTTCCCGTTAAAGGGAAATGCTTTGAAGAGGCATTGTTAATGTCAATTTTTGTA
AATTAATCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGCCCGTCAACTCTATTCCCTGTGGGGAAGAACAAACCAATGGATAACTTTTGTCT
CATGTGTTCATTTATATATAATAATTAGCCTTTTGGGGGAATCAAAATGTTGGCTTTGAC
AATCACTGTTTATCCTGACTTTTTGTTTTGTTTTAATTTTTTCTTTATTTTTATCCTGAC
TTTGTAAAAAATCTGTTTAGTGAAATCACACCAGAAGGAAGAAGAATTACTAAGTTAGAT
CAAATTTTGCTAAATGGAAATAATATAACAATGGTAAGATACAGTAAAGCTATTTTATTT
AGATGTTAAGCCATTTTTATGGGGCAGGGATTACAGAACTAACTTGTCTAAATGCTTGTG
GCCCAGTGGTACTTAAAATGGGAAAGGGATGCTGGTGGTCAGGGCTCTAAAGCTGTTAAA
GATGACATTAGGCCTAAGATTAGTTTGTGATTATTAATCATTTATTTTACCAAGAGTCAT
TGTGGAGACATTAAGTATTGAGGGTGGTGGCATTGTAAAATAGCAGTGACTTGGAGAAAA
TGGGAATATGGGGGAGGAGCAAAGTGGTGTGGCTTTAGTCAATGGGGAGCTCTCAGTAGG
GGTTTTTATATTGTGTAGTAGTGATGATTTTAAGCTTTTTCCTTTTTTGCAGCTGGTTCC
TGGAGGAGAAGGACCTGAAGTATGAATGGATTTCTTCACTTATGCTAGATTCTGTTTTGT
CTTATGACAACAAAATGTAACTTTTTTTTAAACTTTTAATGAACATTTGGATTCTGTGAA
GCCAAGTTTCCCGTTAAAGGGAAATGCTTTGAAGAGGCATTGTTAATGTCAATTTTTGTA
AATTAATCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55239359|gb|EAA10979.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55239359|gb|EAA10979.2|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               170-448, gnl|bosTau2|chr4 (34299826-34299537)
               

               
               170-448, gnl|Hg17|chr7 (32300642-32300341)
               

               
               170-448, gnl|Mm7|chr6 (56665571-56665276)
               


               
               652-852, gnl|bosTau2|chr23 (37095956-37096155)
               

               
               652-852, gnl|Hg17|chr7 (16701722-16701917)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-448, gnl|bosTau2|chr4 (34299826-34299537)
               

               
               170-448, gnl|Hg17|chr7 (32300642-32300341)
               

               
               170-448, gnl|Mm7|chr6 (56665571-56665276)
               


               
               652-852, gnl|bosTau2|chr23 (37095956-37096155)
               

               
               652-852, gnl|Hg17|chr7 (16701722-16701917)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               fat (0.147427)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               fat (0.147427)

	170-448, gnl\|bosTau2\|chr4 (34299826-34299537)
	170-448, gnl\|Hg17\|chr7 (32300642-32300341)
	170-448, gnl\|Mm7\|chr6 (56665571-56665276)

	652-852, gnl\|bosTau2\|chr23 (37095956-37096155)
	652-852, gnl\|Hg17\|chr7 (16701722-16701917)