Non-Coding RNA Search

Ss1.1-rrec09_k19.5

Sequence:


               
               CTAGCCTTCCAGTCAGTGACGTGTGAGGGAGGCACCCGAAGCCTGACCCCCCGTTTAGCC
CTCAGTGTCCTTGCACGAGGCTTCTAGCCAAAGATGACAAAGGGGAGAGGGTTTCCATGC
ATATAGCCTCGTAGACGCACTCTTTCTAAGCTGGTAAACCAAGAATCTAGGACGTAGCCA
AACGAAATGTAACTTCTTGAAAGAAAGAAAGAAACCTTAAGTGTCTCAGCATCAGCTGTC
AGCAGCTTTGTTCTCACTGGGGTGGTAAAAACGTGTGTGCAACCTCTTTTCCTAGTGAAT
TTGACAACTTCAGTGTTCCACAGTTTAAACCATTAACAAGGCTTATTAATTATTTTGGTT
GTTTTAAAAATGCTACTGTGATTTCCTATTAAATGTTCAATCTTTACACATTCGTGCTGG
TTAATATTATTGAATGAAATATTGCCAGGCAAATATACCTAAAACTCATGACGCGTCTGG
GTGCTGTAAAATTTATACTGCGGTGTGGACAGTTTTGAAATGGTCACCATTTTTGATGCT
GTGGATCCCAGGTGAGTGGTAGGTTTTGCATAGGGGATGTTATTGGACTGTTAGGGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGCCTTCCAGTCAGTGACGTGTGAGGGAGGCACCCGAAGCCTGACCCCCCGTTTAGCC
CTCAGTGTCCTTGCACGAGGCTTCTAGCCAAAGATGACAAAGGGGAGAGGGTTTCCATGC
ATATAGCCTCGTAGACGCACTCTTTCTAAGCTGGTAAACCAAGAATCTAGGACGTAGCCA
AACGAAATGTAACTTCTTGAAAGAAAGAAAGAAACCTTAAGTGTCTCAGCATCAGCTGTC
AGCAGCTTTGTTCTCACTGGGGTGGTAAAAACGTGTGTGCAACCTCTTTTCCTAGTGAAT
TTGACAACTTCAGTGTTCCACAGTTTAAACCATTAACAAGGCTTATTAATTATTTTGGTT
GTTTTAAAAATGCTACTGTGATTTCCTATTAAATGTTCAATCTTTACACATTCGTGCTGG
TTAATATTATTGAATGAAATATTGCCAGGCAAATATACCTAAAACTCATGACGCGTCTGG
GTGCTGTAAAATTTATACTGCGGTGTGGACAGTTTTGAAATGGTCACCATTTTTGATGCT
GTGGATCCCAGGTGAGTGGTAGGTTTTGCATAGGGGATGTTATTGGACTGTTAGGGTTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               321-594, gnl|bosTau2|chr26 (29452471-29452198)
               

               
               321-594, gnl|Hg17|chr10 (124179763-124180031)
               

               
               321-594, gnl|Mm7|chr7 (127265185-127265448)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               321-594, gnl|bosTau2|chr26 (29452471-29452198)
               

               
               321-594, gnl|Hg17|chr10 (124179763-124180031)
               

               
               321-594, gnl|Mm7|chr7 (127265185-127265448)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	321-594, gnl\|bosTau2\|chr26 (29452471-29452198)
	321-594, gnl\|Hg17\|chr10 (124179763-124180031)
	321-594, gnl\|Mm7\|chr7 (127265185-127265448)

	cte (0.29274)
	csk (0.281492)
	fbs (0.175346)
	rec (0.17307)
	liv (0.146284)
	cty (0.10408)
	ldo (0.0970026)