Non-Coding RNA Search

Ss1.1-rrec10_g16.5

Sequence:


               
               CTGTTTGGGTCCTATGAACATGTAGTACCTGTACTTAAAAGCTTACATTCATGTGCCACT
TTGACATGAATGAAGAAAATCCATCTATTACAGTACAGTGACAGCTGACCTAATTACTCT
GTCCATCAAACCACTCAAGCTAGTTTGTACTAGTAGAGTTTTGTTTCTATTTTTATTTTG
ATGAATGTTATTTTTTTTAATACAGATTTTCAGTGAGGGGCCTTTTCAACCCCATTGGTT
CTACTTTTCTGTATTTTCCATTTTAATTTGCTTCATAACTTAAACCAAGTCTTTTCTAGT
CTTAAGTATTATTTCTCAATTTTATGATGCTGATGGGCATGTTTATAAGAACTGGAGAGG
TAATTTATTGGAATGAACTGACTTCCTCCGTTCCCCCTTTCCTTTTTGACATGAATTTTA
CTACTTTACAAATGAAGAATGATGTTGCAAAATACCGTGGCGAGGTTGACAAATACCACT
AAAATGATTATGACTTAGAAGTAACTTTCTCCTGCTGCTCTAATCTGATAAATGGTTACT
ATATGACGTTTTCTGACAAGGCATTTGGTTTTGGGTATCTGTTACTTTGGCACTACTCTT
GTTTTCTTTTTCTTTTTGCCAGTGTACTATACCTCAGTCCTATTTAAAAAGAAATCTAAT
CGAAAGAAAAGTCATAGAAACAATAAGTAAATTGATTTGTTTTATAATTTATCCTCCATG
TCCAGTTTGGTTAGTTTGTTATGCAATATAAGTGAAATACCAGGTTTTCTCCTGTGCCCT
TTTTTATCATTAAAATTAACACAAAAAGTGCATTCTCTTGTTTCATACTTACTGGGATAT
TCAGTGTTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTTGGGTCCTATGAACATGTAGTACCTGTACTTAAAAGCTTACATTCATGTGCCACT
TTGACATGAATGAAGAAAATCCATCTATTACAGTACAGTGACAGCTGACCTAATTACTCT
GTCCATCAAACCACTCAAGCTAGTTTGTACTAGTAGAGTTTTGTTTCTATTTTTATTTTG
ATGAATGTTATTTTTTTTAATACAGATTTTCAGTGAGGGGCCTTTTCAACCCCATTGGTT
CTACTTTTCTGTATTTTCCATTTTAATTTGCTTCATAACTTAAACCAAGTCTTTTCTAGT
CTTAAGTATTATTTCTCAATTTTATGATGCTGATGGGCATGTTTATAAGAACTGGAGAGG
TAATTTATTGGAATGAACTGACTTCCTCCGTTCCCCCTTTCCTTTTTGACATGAATTTTA
CTACTTTACAAATGAAGAATGATGTTGCAAAATACCGTGGCGAGGTTGACAAATACCACT
AAAATGATTATGACTTAGAAGTAACTTTCTCCTGCTGCTCTAATCTGATAAATGGTTACT
ATATGACGTTTTCTGACAAGGCATTTGGTTTTGGGTATCTGTTACTTTGGCACTACTCTT
GTTTTCTTTTTCTTTTTGCCAGTGTACTATACCTCAGTCCTATTTAAAAAGAAATCTAAT
CGAAAGAAAAGTCATAGAAACAATAAGTAAATTGATTTGTTTTATAATTTATCCTCCATG
TCCAGTTTGGTTAGTTTGTTATGCAATATAAGTGAAATACCAGGTTTTCTCCTGTGCCCT
TTTTTATCATTAAAATTAACACAAAAAGTGCATTCTCTTGTTTCATACTTACTGGGATAT
TCAGTGTTCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-311, - strand, RNAz p=0.996598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-311, - strand, RNAz p=0.996598

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               40-311, AU132566 NT2RP4 Homo sapiens cDNA clone NT2RP4000102 5', mRNA 
(dbj|AU132566.2|), blast E-value=0, identity=87.5% 
               

               
               4-297, AJ693280 KN261 Bos taurus cDNA clone KN261-029_N10, mRNA sequence 
(emb|AJ693280.1|), blast E-value=0, identity=89.86% 
               

               
               40-311, 602408359F1 NIH_MGC_91 Homo sapiens cDNA clone IMAGE (gb|BG284127.1|), 
blast E-value=0, identity=87.5% 
               

               
               41-304, AMGNNUC (gb|CB713660.1|), blast E-value=0, identity=88.1%
               

               
               4-311, 959062 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770843.1|), 
blast E-value=0, identity=90.32% 
               

               
               40-303, 17000424523542 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN368081.1|), blast E-value=0, identity=87.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-311, AU132566 NT2RP4 Homo sapiens cDNA clone NT2RP4000102 5', mRNA 
(dbj|AU132566.2|), blast E-value=0, identity=87.5% 
               

               
               4-297, AJ693280 KN261 Bos taurus cDNA clone KN261-029_N10, mRNA sequence 
(emb|AJ693280.1|), blast E-value=0, identity=89.86% 
               

               
               40-311, 602408359F1 NIH_MGC_91 Homo sapiens cDNA clone IMAGE (gb|BG284127.1|), 
blast E-value=0, identity=87.5% 
               

               
               41-304, AMGNNUC (gb|CB713660.1|), blast E-value=0, identity=88.1%
               

               
               4-311, 959062 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770843.1|), 
blast E-value=0, identity=90.32% 
               

               
               40-303, 17000424523542 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN368081.1|), blast E-value=0, identity=87.5%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-848, gnl|bosTau2|chr14 (24664202-24665058)
               

               
               4-848, gnl|Hg17|chr8 (81594600-81595436)
               

               
               4-848, gnl|Mm7|chr3 (9287651-9288502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-848, gnl|bosTau2|chr14 (24664202-24665058)
               

               
               4-848, gnl|Hg17|chr8 (81594600-81595436)
               

               
               4-848, gnl|Mm7|chr3 (9287651-9288502)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	40-311, AU132566 NT2RP4 Homo sapiens cDNA clone NT2RP4000102 5', mRNA (dbj\|AU132566.2\|), blast E-value=0, identity=87.5%
	4-297, AJ693280 KN261 Bos taurus cDNA clone KN261-029_N10, mRNA sequence (emb\|AJ693280.1\|), blast E-value=0, identity=89.86%
	40-311, 602408359F1 NIH_MGC_91 Homo sapiens cDNA clone IMAGE (gb\|BG284127.1\|), blast E-value=0, identity=87.5%
	41-304, AMGNNUC (gb\|CB713660.1\|), blast E-value=0, identity=88.1%
	4-311, 959062 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK770843.1\|), blast E-value=0, identity=90.32%
	40-303, 17000424523542 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN368081.1\|), blast E-value=0, identity=87.5%

	4-848, gnl\|bosTau2\|chr14 (24664202-24665058)
	4-848, gnl\|Hg17\|chr8 (81594600-81595436)
	4-848, gnl\|Mm7\|chr3 (9287651-9288502)