Non-Coding RNA Search

Ss1.1-rrec10_k8.5

Sequence:


               
               TGCTCCGGGACCGGTTATGTTTTTTCTGGGGATCTGGCAGAGAAGATATTCAAAGTTTCG
TTAGGCATCCGTCGTTTGCACTTGGAAGACGTCTATGTAGGGATCTGCCTTGCCAAGCTG
AGAATTGATCCTGTGCCCCCCCCCAATGAGTTTGTGTTCAATCACTGGCGAGTTTCTTAC
TCGAGCTGTAAATACAGCCACCTAATTACCTCTCATCAGTTCCAGCCGAGTGAACTGATA
AAATACTGGAACCATTTGCAACAAAATAAGCACAATGCCTGTGCCAACGCAGCAAAAGAA
AAGGCAGGCAGGTATCGCCATCGTAAACTACACTAGGAAAGACAACTTTGTTCTTTTTCC
CAAACGTGCAATCTGTAAAATATTGCTAAAAGCATGTGCAGTTAAAACGGATTACATTCA
TAGGACAAGTTTTAGTTAACTCATCACATAAAGGGAACGAAAAATATTTGACTTTCTGAA
GAAGGTAATTATTCAAAATACAACATGATACGACAAAAAGGTATCCCCAAAGAATCTACT
GAAATCCCACACACGGGGATCCCGTGTATTAACAGGCAGTAACAGGCAGGAGTCCATCAA
TGGTTCAAGTCTTATGCTAGGAGCCAACAAGATGTATCTGCATATATTTTCCACAAAAAT
TTTAATTTAAGAAATGGAGACATTCAAAAGACCCTTTGTTTTAGATTCAGTTTTTCATTT
CAATATATAATTAAATGTAAATAAAACATAACTGTCGATTTTAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCGGGACCGGTTATGTTTTTTCTGGGGATCTGGCAGAGAAGATATTCAAAGTTTCG
TTAGGCATCCGTCGTTTGCACTTGGAAGACGTCTATGTAGGGATCTGCCTTGCCAAGCTG
AGAATTGATCCTGTGCCCCCCCCCAATGAGTTTGTGTTCAATCACTGGCGAGTTTCTTAC
TCGAGCTGTAAATACAGCCACCTAATTACCTCTCATCAGTTCCAGCCGAGTGAACTGATA
AAATACTGGAACCATTTGCAACAAAATAAGCACAATGCCTGTGCCAACGCAGCAAAAGAA
AAGGCAGGCAGGTATCGCCATCGTAAACTACACTAGGAAAGACAACTTTGTTCTTTTTCC
CAAACGTGCAATCTGTAAAATATTGCTAAAAGCATGTGCAGTTAAAACGGATTACATTCA
TAGGACAAGTTTTAGTTAACTCATCACATAAAGGGAACGAAAAATATTTGACTTTCTGAA
GAAGGTAATTATTCAAAATACAACATGATACGACAAAAAGGTATCCCCAAAGAATCTACT
GAAATCCCACACACGGGGATCCCGTGTATTAACAGGCAGTAACAGGCAGGAGTCCATCAA
TGGTTCAAGTCTTATGCTAGGAGCCAACAAGATGTATCTGCATATATTTTCCACAAAAAT
TTTAATTTAAGAAATGGAGACATTCAAAAGACCCTTTGTTTTAGATTCAGTTTTTCATTT
CAATATATAATTAAATGTAAATAAAACATAACTGTCGATTTTAAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-319, - strand, RNAz p=0.969966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, - strand, RNAz p=0.969966

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               156-276, - strand, RNAmicro p=0.999648

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               156-276, - strand, RNAmicro p=0.999648

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr16 (5044179-5043401)
               

               
               1-768, gnl|Hg17|chr1 (189881416-189880652)
               

               
               1-768, gnl|Mm7|chr1 (143573342-143574093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr16 (5044179-5043401)
               

               
               1-768, gnl|Hg17|chr1 (189881416-189880652)
               

               
               1-768, gnl|Mm7|chr1 (143573342-143574093)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               ste (0.135208)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               ste (0.135208)

	1-768, gnl\|bosTau2\|chr16 (5044179-5043401)
	1-768, gnl\|Hg17\|chr1 (189881416-189880652)
	1-768, gnl\|Mm7\|chr1 (143573342-143574093)

	hea (0.204499)
	rec (0.17307)
	eye (0.170503)
	lin (0.145603)
	che (0.136314)
	ste (0.135208)