Non-Coding RNA Search

Ss1.1-rrec10_m20.5

Sequence:


               
               CCTCACGGAAGCTGAGAATTGCAGAGCGCGACCACTGGAATTGGTGAGGCAGAGCCGCGA
TGTTCCGGATCGAGGGCCTCGCGCCGAAGCTGGACCCTGAGGAGATGAAACGGAAGATGC
GTGAGGATGTGATCTCTTCCATACGGAACTTCCTCATCTATGTGGCCCTGCTGCGAGTCA
CTCCTTTTATCTTAAAGAAATTGGACAGCATATGAAGAGTGGGCATCACGTGTGAACGCA
TGATGTGAAGAGCCTGGTTACAGTTTCTACTCTTGTCTGCAGATGAATAAGCCCAGAGAG
ATGTAAGAGACTCTTTGAATGGACATAAACATTCTGCTTGTTAAGAACAAGTTTGGCTTT
GGTAACTGACGTTTATAGCTAAAAGATAAAGCCATTTGGGAATTAGGAAAAGATGTTTTG
TGGTCATAGTACACCCTTTTTGCCTGTGATAATCAGCCTTCATGAATGTTGATATAATTG
TAAATGATGTCAAACTCCATTTTCTAGCAAGTGTTAATTACAAGGGAATTATATCTGCAA
TGGCACTGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCACGGAAGCTGAGAATTGCAGAGCGCGACCACTGGAATTGGTGAGGCAGAGCCGCGA
TGTTCCGGATCGAGGGCCTCGCGCCGAAGCTGGACCCTGAGGAGATGAAACGGAAGATGC
GTGAGGATGTGATCTCTTCCATACGGAACTTCCTCATCTATGTGGCCCTGCTGCGAGTCA
CTCCTTTTATCTTAAAGAAATTGGACAGCATATGAAGAGTGGGCATCACGTGTGAACGCA
TGATGTGAAGAGCCTGGTTACAGTTTCTACTCTTGTCTGCAGATGAATAAGCCCAGAGAG
ATGTAAGAGACTCTTTGAATGGACATAAACATTCTGCTTGTTAAGAACAAGTTTGGCTTT
GGTAACTGACGTTTATAGCTAAAAGATAAAGCCATTTGGGAATTAGGAAAAGATGTTTTG
TGGTCATAGTACACCCTTTTTGCCTGTGATAATCAGCCTTCATGAATGTTGATATAATTG
TAAATGATGTCAAACTCCATTTTCTAGCAAGTGTTAATTACAAGGGAATTATATCTGCAA
TGGCACTGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49169828|ref|NP_001001790.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49169828|ref|NP_001001790.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               11-549, gnl|bosTau2|chr9 (54440549-54440026)
               

               
               11-549, gnl|Hg17|chr9 (37582579-37578570)
               

               
               11-549, gnl|Mm7|chr5 (54025432-54024985)
               


               
               40-537, gnl|bosTau2|chr18 (44517382-44517867)
               

               
               40-537, gnl|Hg17|chr5 (69374186-69374688)
               

               
               40-537, gnl|Mm7|chr5 (54025432-54024972)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-549, gnl|bosTau2|chr9 (54440549-54440026)
               

               
               11-549, gnl|Hg17|chr9 (37582579-37578570)
               

               
               11-549, gnl|Mm7|chr5 (54025432-54024985)
               


               
               40-537, gnl|bosTau2|chr18 (44517382-44517867)
               

               
               40-537, gnl|Hg17|chr5 (69374186-69374688)
               

               
               40-537, gnl|Mm7|chr5 (54025432-54024972)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               hlv (0.417769)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	11-549, gnl\|bosTau2\|chr9 (54440549-54440026)
	11-549, gnl\|Hg17\|chr9 (37582579-37578570)
	11-549, gnl\|Mm7\|chr5 (54025432-54024985)

	40-537, gnl\|bosTau2\|chr18 (44517382-44517867)
	40-537, gnl\|Hg17\|chr5 (69374186-69374688)
	40-537, gnl\|Mm7\|chr5 (54025432-54024972)

	hlv (0.417769)
	thg (0.380373)
	sag (0.36543)
	ill (0.351185)
	nje (0.33184)
	eje (0.296501)
	pty (0.285429)
	fce (0.271592)
	cbe (0.239234)
	mas (0.210305)
	fcc (0.197785)
	aor (0.195274)
	gul (0.177588)
	ton (0.1755)
	rec (0.17307)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)