Non-Coding RNA Search

Ss1.1-rrec11_a13.5

Sequence:


               
               TTCCTTGTTCCTGACCCATCAGCTTTGAACTTGTTGCACATTCTACCTTTGCTTGCCTTC
TTAATTTCCTGTTCACTCTATTGTCTTGGGCTTGCATATGTCTTGAGACACCCAGTGCAA
ATCATGCCACCCTGGATCCTGGTTCACTGCATCCCAGCTTATAAATATAAACTACCATAA
GCCTCATACTGACCAAAGGACTTTCAACATAGGTAATTACAGTTTTGGTGATACAAGAAC
ATTTACATGAGTAAAAATGATTAAGCCCTGTGAAATTAGGTGGTTCCATTGAATGCTATT
AATTTGAATCTTTGAATGTCAACTTATTTGCAATCACTTAAATTTAAAAGTATATATGCT
TGGAAATATTGAATTCTATTATATATCCATCTGGTTAAAAAGCTAAATTATATAGACAAA
TACTACTAGTTTACTAGAATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTGTTCCTGACCCATCAGCTTTGAACTTGTTGCACATTCTACCTTTGCTTGCCTTC
TTAATTTCCTGTTCACTCTATTGTCTTGGGCTTGCATATGTCTTGAGACACCCAGTGCAA
ATCATGCCACCCTGGATCCTGGTTCACTGCATCCCAGCTTATAAATATAAACTACCATAA
GCCTCATACTGACCAAAGGACTTTCAACATAGGTAATTACAGTTTTGGTGATACAAGAAC
ATTTACATGAGTAAAAATGATTAAGCCCTGTGAAATTAGGTGGTTCCATTGAATGCTATT
AATTTGAATCTTTGAATGTCAACTTATTTGCAATCACTTAAATTTAAAAGTATATATGCT
TGGAAATATTGAATTCTATTATATATCCATCTGGTTAAAAAGCTAAATTATATAGACAAA
TACTACTAGTTTACTAGAATTACT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-361, gnl|bosTau2|chr5 (41913132-41913501)
               

               
               1-361, gnl|canFam2|chr15 (43189005-43189312)
               

               
               1-361, gnl|echTel1|scaffold_147246 (468-782)
               

               
               1-361, gnl|hg17|chr12 (100052471-100052777)
               

               
               1-361, gnl|Hg17|chr12 (100052809-100052470)
               

               
               1-361, gnl|loxAfr1|scaffold_201868 (1344-1044)
               

               
               1-361, gnl|mm7|chr10 (88486109-88485866)
               

               
               1-361, gnl|panTro1|chr10 (102497102-102497408)
               

               
               1-361, gnl|rheMac2|chr11 (102361678-102361985)
               

               
               1-361, gnl|rn3|chr7 (25647692-25647449)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-361, gnl|bosTau2|chr5 (41913132-41913501)
               

               
               1-361, gnl|canFam2|chr15 (43189005-43189312)
               

               
               1-361, gnl|echTel1|scaffold_147246 (468-782)
               

               
               1-361, gnl|hg17|chr12 (100052471-100052777)
               

               
               1-361, gnl|Hg17|chr12 (100052809-100052470)
               

               
               1-361, gnl|loxAfr1|scaffold_201868 (1344-1044)
               

               
               1-361, gnl|mm7|chr10 (88486109-88485866)
               

               
               1-361, gnl|panTro1|chr10 (102497102-102497408)
               

               
               1-361, gnl|rheMac2|chr11 (102361678-102361985)
               

               
               1-361, gnl|rn3|chr7 (25647692-25647449)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               tra (0.369276)
               

               
               sin (0.349895)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)

	1-361, gnl\|bosTau2\|chr5 (41913132-41913501)
	1-361, gnl\|canFam2\|chr15 (43189005-43189312)
	1-361, gnl\|echTel1\|scaffold_147246 (468-782)
	1-361, gnl\|hg17\|chr12 (100052471-100052777)
	1-361, gnl\|Hg17\|chr12 (100052809-100052470)
	1-361, gnl\|loxAfr1\|scaffold_201868 (1344-1044)
	1-361, gnl\|mm7\|chr10 (88486109-88485866)
	1-361, gnl\|panTro1\|chr10 (102497102-102497408)
	1-361, gnl\|rheMac2\|chr11 (102361678-102361985)
	1-361, gnl\|rn3\|chr7 (25647692-25647449)

	tra (0.369276)
	sin (0.349895)
	ill (0.175593)
	rec (0.17307)
	lyg (0.133103)