Non-Coding RNA Search

Ss1.1-rrec11_i8.5

Sequence:


               
               TAGCACATCCCAGTCTAATCAAGGCACGACCACCCCCCTGGTTCCCAAACTAGTAACCTA
GAACTCCTCTTCAATACCTTCTTCTCCCTAACCACACCCCTCTCTCCATCAATTCATTAC
CAGGTCCTGTCTTTTTACCTTGTAAATTTGTCTACTCCCCCTCACTTACTGCTTTCCTAA
TGTAAGCTTCTGTCAGCATTTTTTACTTGCATTACTGCAGTTACCTCCTAACTAGTCTTC
CTAAGCTGCTGTGGCCCTCTTGATTGATTCTTGATACCGCAGGCAGAATTCTCTTTTTTG
AGGTTTTAATCAAGGCATCCCATCTACCCCCAGTTTCACCCCAGCTTAAAACATTTTGAT
GGTCTTTCATTGCTCTTATCACCCCCCCCCAAAAAAAAGGTTTTGAAACCTGCTAGATCA
CATATTGGGGCTACTATTTATAATTCTGAACACTGAAAGAATTAATGTCTCAGAATATTA
AAACAATGGCTGGTACATCACCTTAACAAGCACTTAATAGACATTAGTCTTACTCTGCAC
CACGTTTCACTTTTTTTGTATTCTACCCTCATTGCACTTTAAGTATCTGGAATAAGTGAG
AATTAAAGTGCTTCTTCCACCATAGGAGCCTTTGTTCATGCTGTTCCTATGGCTTGAAAT
ACCTTCCCTTTTCATTGCTTAGTTAATTCCTGTTTGTCTTTTAGATCTCAGCTCATTCAT
CACTTCCTCGGGGAAGCTTTCTTTAATTTCTGTCATAGAGTAAGACCCCACTGATGTATA
TTATCACATGGATTCATACCTCTACTTAGCTTTGAACACCTTTGTAATTTTCTATGTATT
TGTTCAAGTAATGTATCCCTTCTCGATTGTAAACTCCATGAGGACAGGAATTGTGTTTTT
GTTGTCGCTGTTCAACTTTGTATTCCTTGTGCCTCATACAGTGCCTGGCTTATAGTAGGT
GCTCAATAAATTTGTTGAAAGAATAAAATGAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCACATCCCAGTCTAATCAAGGCACGACCACCCCCCTGGTTCCCAAACTAGTAACCTA
GAACTCCTCTTCAATACCTTCTTCTCCCTAACCACACCCCTCTCTCCATCAATTCATTAC
CAGGTCCTGTCTTTTTACCTTGTAAATTTGTCTACTCCCCCTCACTTACTGCTTTCCTAA
TGTAAGCTTCTGTCAGCATTTTTTACTTGCATTACTGCAGTTACCTCCTAACTAGTCTTC
CTAAGCTGCTGTGGCCCTCTTGATTGATTCTTGATACCGCAGGCAGAATTCTCTTTTTTG
AGGTTTTAATCAAGGCATCCCATCTACCCCCAGTTTCACCCCAGCTTAAAACATTTTGAT
GGTCTTTCATTGCTCTTATCACCCCCCCCCAAAAAAAAGGTTTTGAAACCTGCTAGATCA
CATATTGGGGCTACTATTTATAATTCTGAACACTGAAAGAATTAATGTCTCAGAATATTA
AAACAATGGCTGGTACATCACCTTAACAAGCACTTAATAGACATTAGTCTTACTCTGCAC
CACGTTTCACTTTTTTTGTATTCTACCCTCATTGCACTTTAAGTATCTGGAATAAGTGAG
AATTAAAGTGCTTCTTCCACCATAGGAGCCTTTGTTCATGCTGTTCCTATGGCTTGAAAT
ACCTTCCCTTTTCATTGCTTAGTTAATTCCTGTTTGTCTTTTAGATCTCAGCTCATTCAT
CACTTCCTCGGGGAAGCTTTCTTTAATTTCTGTCATAGAGTAAGACCCCACTGATGTATA
TTATCACATGGATTCATACCTCTACTTAGCTTTGAACACCTTTGTAATTTTCTATGTATT
TGTTCAAGTAATGTATCCCTTCTCGATTGTAAACTCCATGAGGACAGGAATTGTGTTTTT
GTTGTCGCTGTTCAACTTTGTATTCCTTGTGCCTCATACAGTGCCTGGCTTATAGTAGGT
GCTCAATAAATTTGTTGAAAGAATAAAATGAATGGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               392-710, gnl|bosTau2|chr23 (4484281-4483954)
               


               
               713-996, gnl|bosTau2|chr23 (4484369-4484639)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               392-710, gnl|bosTau2|chr23 (4484281-4483954)
               


               
               713-996, gnl|bosTau2|chr23 (4484369-4484639)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               pro (0.512033)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pla (0.133672)

	392-710, gnl\|bosTau2\|chr23 (4484281-4483954)

	713-996, gnl\|bosTau2\|chr23 (4484369-4484639)

	pro (0.512033)
	rec (0.17307)
	fat (0.147427)
	lin (0.145603)
	pla (0.133672)