Ss1.1-rrec14_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGCCCAATTTTTGTGGTTCCCCTGACAACCATCATCTTTGTGATGACAGAAGCTCTT TCTGTGCTTGAATATAATTGAGAGTTCTTATGAAGCAATTATTTTCTAGGGGAGTGGAAA ATCAACTTTAGCGAAGGCAATCTGTAAAGAAGCGTTTGACGTATTGGATGCCCATGTGGA GATAGTTGACTGTAAAGCTTTACGAGGAAAAAGGCTTGAAAACCTACAAAAAACCATAGT GGCGGCTTTCTCAGAGGCATCGTGGAGGCAGCCTTCTGTTGTTCTGCTGGACGACCTGGA TCTGGTTGCGGGCCTGCCTGCCCTCCCGGAACATGAGCATAGTCCTGAGGCTGTGCAGAG CCAGAGGCTGGCACATGCCTTGAATGATATGACGAAAGAGTTAATTTCCATGGGAAGTTT GGTTGCACTGATTGCTACAAGCCAGTCTCAGCATTCTCTACATCCTTTACTTGTTTCTGC TCAAGGAATTCACCTGTTTCAGTGCGTCCAGCACATACAGCCTCCTGATCAGGAGCAAAG ATGTGAAATTCTGCATAATGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGCCCAATTTTTGTGGTTCCCCTGACAACCATCATCTTTGTGATGACAGAAGCTCTT TCTGTGCTTGAATATAATTGAGAGTTCTTATGAAGCAATTATTTTCTAGGGGAGTGGAAA ATCAACTTTAGCGAAGGCAATCTGTAAAGAAGCGTTTGACGTATTGGATGCCCATGTGGA GATAGTTGACTGTAAAGCTTTACGAGGAAAAAGGCTTGAAAACCTACAAAAAACCATAGT GGCGGCTTTCTCAGAGGCATCGTGGAGGCAGCCTTCTGTTGTTCTGCTGGACGACCTGGA TCTGGTTGCGGGCCTGCCTGCCCTCCCGGAACATGAGCATAGTCCTGAGGCTGTGCAGAG CCAGAGGCTGGCACATGCCTTGAATGATATGACGAAAGAGTTAATTTCCATGGGAAGTTT GGTTGCACTGATTGCTACAAGCCAGTCTCAGCATTCTCTACATCCTTTACTTGTTTCTGC TCAAGGAATTCACCTGTTTCAGTGCGTCCAGCACATACAGCCTCCTGATCAGGAGCAAAG ATGTGAAATTCTGCATAATGCCAT |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 47-207, gnl|bosTau2|chr4 (1398611-1398454) | |
| 47-207, gnl|canFam2|chr14 (21041268-21041413) | |
| 47-207, gnl|danRer3|chr19 (50562330-50562220) | |
| 47-207, gnl|dasNov1|scaffold_62690 (2096-2234) | |
| 47-207, gnl|echTel1|scaffold_308502 (353525-353383) | |
| 47-207, gnl|fr1|chrUn (86995990-86996120) | |
| 47-207, gnl|galGal2|chr2 (21972734-21972857) | |
| 47-207, gnl|hg17|chr7 (91780185-91780324) | |
| 47-207, gnl|Hg17|chr7 (91780371-91780212) | |
| 47-207, gnl|loxAfr1|scaffold_22885 (5826-5965) | |
| 47-207, gnl|mm7|chr5 (3624942-3624810) | |
| 47-207, gnl|Mm7|chr5 (3624760-3624920) | |
| 47-207, gnl|monDom2|scaffold_7 (60482110-60482230) | |
| 47-207, gnl|oryCun1|scaffold_179474 (26258-26385) | |
| 47-207, gnl|panTro1|chr6 (93336468-93336607) | |
| 47-207, gnl|rheMac2|chr3 (124760115-124759976) | |
| 47-207, gnl|rn3|chr4 (27270660-27270792) | |
| 47-207, gnl|tetNig1|chr21 (1073912-1074012) | |
| 47-207, gnl|xenTro1|scaffold_182 (56932-57041) | |
| 377-533, gnl|bosTau2|chr4 (1395290-1395134) | |
| 377-533, gnl|canFam2|chr14 (21038990-21039149) | |
| 377-533, gnl|danRer3|chr19 (50562822-50562663) | |
| 377-533, gnl|dasNov1|scaffold_141074 (4001-4160) | |
| 377-533, gnl|echTel1|scaffold_308502 (357901-357742) | |
| 377-533, gnl|galGal2|chr2 (21971463-21971622) | |
| 377-533, gnl|hg17|chr7 (91777005-91777164) | |
| 377-533, gnl|Hg17|chr7 (91777161-91777005) | |
| 377-533, gnl|loxAfr1|scaffold_22885 (2222-2381) | |
| 377-533, gnl|mm7|chr5 (3628396-3628237) | |
| 377-533, gnl|Mm7|chr5 (3628238-3628394) | |
| 377-533, gnl|monDom2|scaffold_7 (60471466-60471625) | |
| 377-533, gnl|oryCun1|scaffold_179474 (21445-21604) | |
| 377-533, gnl|panTro1|chr6 (93333267-93333426) | |
| 377-533, gnl|rheMac2|chr3 (124763320-124763161) | |
| 377-533, gnl|rn3|chr4 (27267182-27267341) | |
| 377-533, gnl|xenTro1|scaffold_182 (54902-55061) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-207, gnl|bosTau2|chr4 (1398611-1398454) | |
| 47-207, gnl|canFam2|chr14 (21041268-21041413) | |
| 47-207, gnl|danRer3|chr19 (50562330-50562220) | |
| 47-207, gnl|dasNov1|scaffold_62690 (2096-2234) | |
| 47-207, gnl|echTel1|scaffold_308502 (353525-353383) | |
| 47-207, gnl|fr1|chrUn (86995990-86996120) | |
| 47-207, gnl|galGal2|chr2 (21972734-21972857) | |
| 47-207, gnl|hg17|chr7 (91780185-91780324) | |
| 47-207, gnl|Hg17|chr7 (91780371-91780212) | |
| 47-207, gnl|loxAfr1|scaffold_22885 (5826-5965) | |
| 47-207, gnl|mm7|chr5 (3624942-3624810) | |
| 47-207, gnl|Mm7|chr5 (3624760-3624920) | |
| 47-207, gnl|monDom2|scaffold_7 (60482110-60482230) | |
| 47-207, gnl|oryCun1|scaffold_179474 (26258-26385) | |
| 47-207, gnl|panTro1|chr6 (93336468-93336607) | |
| 47-207, gnl|rheMac2|chr3 (124760115-124759976) | |
| 47-207, gnl|rn3|chr4 (27270660-27270792) | |
| 47-207, gnl|tetNig1|chr21 (1073912-1074012) | |
| 47-207, gnl|xenTro1|scaffold_182 (56932-57041) | |
| 377-533, gnl|bosTau2|chr4 (1395290-1395134) | |
| 377-533, gnl|canFam2|chr14 (21038990-21039149) | |
| 377-533, gnl|danRer3|chr19 (50562822-50562663) | |
| 377-533, gnl|dasNov1|scaffold_141074 (4001-4160) | |
| 377-533, gnl|echTel1|scaffold_308502 (357901-357742) | |
| 377-533, gnl|galGal2|chr2 (21971463-21971622) | |
| 377-533, gnl|hg17|chr7 (91777005-91777164) | |
| 377-533, gnl|Hg17|chr7 (91777161-91777005) | |
| 377-533, gnl|loxAfr1|scaffold_22885 (2222-2381) | |
| 377-533, gnl|mm7|chr5 (3628396-3628237) | |
| 377-533, gnl|Mm7|chr5 (3628238-3628394) | |
| 377-533, gnl|monDom2|scaffold_7 (60471466-60471625) | |
| 377-533, gnl|oryCun1|scaffold_179474 (21445-21604) | |
| 377-533, gnl|panTro1|chr6 (93333267-93333426) | |
| 377-533, gnl|rheMac2|chr3 (124763320-124763161) | |
| 377-533, gnl|rn3|chr4 (27267182-27267341) | |
| 377-533, gnl|xenTro1|scaffold_182 (54902-55061) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.17307) |