Non-Coding RNA Search

Ss1.1-rrec17_g15.5

Sequence:


               
               GATAAAATGAACATCAAGGAGCCAGCTGACACAGAAGTGCTACAGTACCAGCTTCAACAC
CTCACCCTCAGAGGGGACCGTGTGTTTGCTAGGAATAACACATGAGTGACTTGCAGAGAG
TGTAAATCAGTTTACACTTGGCTAGAAAATTTCACTGTTGTACTCTGTACAGGACTCTTT
ACATTATAGATGGTTCTATCAGTTAGGTATTCCTGGAACATAAACATTGTTTGGATCAAA
TTTTGAATACAGGAATGAAATAACAGGTACTTGAGGGGTAATCATTCTAGAGCACGCAAC
TGCAAGGAAAACAGAATGTTGACCATTAGTTTGTATAGCTTTTTAGCTAGGAAAAAAAGG
CTTTGGTGCAGTAATATCATCTTTAAGATTCTGATACTCAAATTGGGAATGTTATCTGCT
TGGTTGTTGCTGACTTGGTATGATTCATTAGAAATTTATATCTTAAGTACTCAAGTACTT
CTTTAATCTCTGTATTTTACTATAAAATGTATGTAATGATTTGTTTTATGAAATTTAGAA
CTTGAACATTGCTAAATTGGACCACTTTTTATTTTTAAATATTGAGTTTAAATATTTTAT
AACTGGCTCCCGCACTGAAAAAAATTAACATTTCAGATTGACAAGAGAATAATCTTTCTT
CACTTGCCTCAATAATATTATTGAGCAATGAATTTTTTTATTTCCGCATGGAAAGTTATT
GATCTCTATGGCTGTAAAATATTTCTTTATAGCGTTATTAAAGTGTGTCTTAATAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAAATGAACATCAAGGAGCCAGCTGACACAGAAGTGCTACAGTACCAGCTTCAACAC
CTCACCCTCAGAGGGGACCGTGTGTTTGCTAGGAATAACACATGAGTGACTTGCAGAGAG
TGTAAATCAGTTTACACTTGGCTAGAAAATTTCACTGTTGTACTCTGTACAGGACTCTTT
ACATTATAGATGGTTCTATCAGTTAGGTATTCCTGGAACATAAACATTGTTTGGATCAAA
TTTTGAATACAGGAATGAAATAACAGGTACTTGAGGGGTAATCATTCTAGAGCACGCAAC
TGCAAGGAAAACAGAATGTTGACCATTAGTTTGTATAGCTTTTTAGCTAGGAAAAAAAGG
CTTTGGTGCAGTAATATCATCTTTAAGATTCTGATACTCAAATTGGGAATGTTATCTGCT
TGGTTGTTGCTGACTTGGTATGATTCATTAGAAATTTATATCTTAAGTACTCAAGTACTT
CTTTAATCTCTGTATTTTACTATAAAATGTATGTAATGATTTGTTTTATGAAATTTAGAA
CTTGAACATTGCTAAATTGGACCACTTTTTATTTTTAAATATTGAGTTTAAATATTTTAT
AACTGGCTCCCGCACTGAAAAAAATTAACATTTCAGATTGACAAGAGAATAATCTTTCTT
CACTTGCCTCAATAATATTATTGAGCAATGAATTTTTTTATTTCCGCATGGAAAGTTATT
GATCTCTATGGCTGTAAAATATTTCTTTATAGCGTTATTAAAGTGTGTCTTAATAAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               613-767, - strand, RNAz p=0.985088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               613-767, - strand, RNAz p=0.985088

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr7 (65102456-65103246)
               

               
               1-780, gnl|Hg17|chr5 (102640039-102640825)
               

               
               1-780, gnl|Mm7|chr1 (97498015-97497215)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr7 (65102456-65103246)
               

               
               1-780, gnl|Hg17|chr5 (102640039-102640825)
               

               
               1-780, gnl|Mm7|chr1 (97498015-97497215)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.519211)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)

	1-780, gnl\|bosTau2\|chr7 (65102456-65103246)
	1-780, gnl\|Hg17\|chr5 (102640039-102640825)
	1-780, gnl\|Mm7\|chr1 (97498015-97497215)