Non-Coding RNA Search

Ss1.1-rrec22_c22.5

Sequence:


               
               CCTCTCCTCCCTTTGTGCCTGCTTCCTTTCAGAGTGAGGTTTTACAGCATTTTGCAGACC
TTTTCCATCTTCAAATGCCACCTTTGTGAAGTAACTCATGCCCCAATGGCCGTAAGTGTG
ACAGTCACCTTCAGGCATCTCCTGCGTGGGAGGGGACTGTACCCAGATCTGCAGGTCGAT
GTATGGGTTAATCTTTTTTCCCTCCATCCGGGTGAGGTCCCAGATGCACCAGCCAACCAG
TGCACTGTGACTGTGCTGTGTGCCCTCCCCATGGATGTGCCATGGTGGTGAACCTGGCTG
ATGCAGGCAGAGACCCCGGGTTTGGCGAAAAGTCGGAGCGAGCCTGACCCCTGCTCCAGG
CTTCTTGTGATTCTAGAAACCAGACCACCTGTAACGCGGTCTTAGATCCTTCTCATGCCC
AAGAGCACCTAGAAGTGAGAACACTGTATAACTAAGATTTACACTTGGTTTTTTTTTTTC
TTATTTAGTTTTCTGGTGAAGCAAATCAAATAAGGAACTGTCTTTATTTTAGGTGGAATT
CTTTGTTTTTTAACTCTCAGCATATTCACCCTACATAGATAATATATCAGGAAAAGTAAT
GAACAACCTTTTTTATTACTAAAGAATGGAAGTAGTGCTTTATTTATAGGCTTTAGAGTT
TGGCTTCTGCAGTACTTTATTATCTACACGTAATTTGGCCAGAGATAAGAAATTGGAAAG
AATCGTGTGGTTAGTTTCTAGCCCAGGAAAGATGATGAATGCCACTGATGAAATATGCTG
TGACTTTCACGAAATAAAATTTAATGTCCTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCCTCCCTTTGTGCCTGCTTCCTTTCAGAGTGAGGTTTTACAGCATTTTGCAGACC
TTTTCCATCTTCAAATGCCACCTTTGTGAAGTAACTCATGCCCCAATGGCCGTAAGTGTG
ACAGTCACCTTCAGGCATCTCCTGCGTGGGAGGGGACTGTACCCAGATCTGCAGGTCGAT
GTATGGGTTAATCTTTTTTCCCTCCATCCGGGTGAGGTCCCAGATGCACCAGCCAACCAG
TGCACTGTGACTGTGCTGTGTGCCCTCCCCATGGATGTGCCATGGTGGTGAACCTGGCTG
ATGCAGGCAGAGACCCCGGGTTTGGCGAAAAGTCGGAGCGAGCCTGACCCCTGCTCCAGG
CTTCTTGTGATTCTAGAAACCAGACCACCTGTAACGCGGTCTTAGATCCTTCTCATGCCC
AAGAGCACCTAGAAGTGAGAACACTGTATAACTAAGATTTACACTTGGTTTTTTTTTTTC
TTATTTAGTTTTCTGGTGAAGCAAATCAAATAAGGAACTGTCTTTATTTTAGGTGGAATT
CTTTGTTTTTTAACTCTCAGCATATTCACCCTACATAGATAATATATCAGGAAAAGTAAT
GAACAACCTTTTTTATTACTAAAGAATGGAAGTAGTGCTTTATTTATAGGCTTTAGAGTT
TGGCTTCTGCAGTACTTTATTATCTACACGTAATTTGGCCAGAGATAAGAAATTGGAAAG
AATCGTGTGGTTAGTTTCTAGCCCAGGAAAGATGATGAATGCCACTGATGAAATATGCTG
TGACTTTCACGAAATAAAATTTAATGTCCTTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               216-323, - strand, RNAz p=0.99519

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-323, - strand, RNAz p=0.99519

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               19-814, gnl|bosTau2|chr17 (24340566-24339780)
               

               
               19-814, gnl|Hg17|chr12 (130150065-130150889)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-814, gnl|bosTau2|chr17 (24340566-24339780)
               

               
               19-814, gnl|Hg17|chr12 (130150065-130150889)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               rec (0.519211)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	19-814, gnl\|bosTau2\|chr17 (24340566-24339780)
	19-814, gnl\|Hg17\|chr12 (130150065-130150889)

	rec (0.519211)
	bla (0.248694)
	aor (0.195274)
	sto (0.179824)
	fat (0.147427)
	ssp (0.13552)
	tra (0.123092)
	med (0.116252)