Non-Coding RNA Search

Ss1.1-rrec24_m5.5

Sequence:


               
               TGTTTTCCATGTTAAATTTTTTAATGAGTAGTATAACTTGATTTCCCCTCAAAAAGAAAA
TACTTCTGTTTTTTTTCTAATTGTTAAAGAAAGAAAGATCTGATTTAAAATAAAAATGGC
TAAGTGAAAATCTTTTTATTCCAGGCCTTCTCTCAGAAGTCAGCCCCAAAGGAAAATGAG
AAATAAAAACATAAATTTGATCTTCAGTGAAACTAGCAGATATCTACAACCTGAGTCACA
AAATACAAGGACAGAAAATGAACAGAGGAGCAATGACTGACTCAGCAGTGGAGAGATGGG
AGACACCCGGCACAGAGGCAACATGGATGAGAAACAAGCCAACAGAGCAGGCAAAGTCCA
GGACCCTGAGGCACCAGATGCTACAGAAAGTTAAGCCAATTTTACAGAAATAGATCATAA
TTGAAGAAATCACAAATACCTTGGTGGTATTTATGAGCAAATATAATTTTCAAGATGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTCCATGTTAAATTTTTTAATGAGTAGTATAACTTGATTTCCCCTCAAAAAGAAAA
TACTTCTGTTTTTTTTCTAATTGTTAAAGAAAGAAAGATCTGATTTAAAATAAAAATGGC
TAAGTGAAAATCTTTTTATTCCAGGCCTTCTCTCAGAAGTCAGCCCCAAAGGAAAATGAG
AAATAAAAACATAAATTTGATCTTCAGTGAAACTAGCAGATATCTACAACCTGAGTCACA
AAATACAAGGACAGAAAATGAACAGAGGAGCAATGACTGACTCAGCAGTGGAGAGATGGG
AGACACCCGGCACAGAGGCAACATGGATGAGAAACAAGCCAACAGAGCAGGCAAAGTCCA
GGACCCTGAGGCACCAGATGCTACAGAAAGTTAAGCCAATTTTACAGAAATAGATCATAA
TTGAAGAAATCACAAATACCTTGGTGGTATTTATGAGCAAATATAATTTTCAAGATGATA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-391, gnl|bosTau2|chr10 (45580559-45580935)
               

               
               1-391, gnl|canFam2|chr8 (33921549-33922201)
               

               
               1-391, gnl|dasNov1|scaffold_9551 (14111-13459)
               

               
               1-391, gnl|hg17|chr14 (54574895-54575564)
               

               
               1-391, gnl|Hg17|chr14 (54575936-54575265)
               

               
               1-391, gnl|loxAfr1|scaffold_30703 (11555-12234)
               

               
               1-391, gnl|panTro1|chr15 (54028654-54029323)
               

               
               1-391, gnl|rheMac2|chr7 (118054504-118055176)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-391, gnl|bosTau2|chr10 (45580559-45580935)
               

               
               1-391, gnl|canFam2|chr8 (33921549-33922201)
               

               
               1-391, gnl|dasNov1|scaffold_9551 (14111-13459)
               

               
               1-391, gnl|hg17|chr14 (54574895-54575564)
               

               
               1-391, gnl|Hg17|chr14 (54575936-54575265)
               

               
               1-391, gnl|loxAfr1|scaffold_30703 (11555-12234)
               

               
               1-391, gnl|panTro1|chr15 (54028654-54029323)
               

               
               1-391, gnl|rheMac2|chr7 (118054504-118055176)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               spc (0.113366)

	1-391, gnl\|bosTau2\|chr10 (45580559-45580935)
	1-391, gnl\|canFam2\|chr8 (33921549-33922201)
	1-391, gnl\|dasNov1\|scaffold_9551 (14111-13459)
	1-391, gnl\|hg17\|chr14 (54574895-54575564)
	1-391, gnl\|Hg17\|chr14 (54575936-54575265)
	1-391, gnl\|loxAfr1\|scaffold_30703 (11555-12234)
	1-391, gnl\|panTro1\|chr15 (54028654-54029323)
	1-391, gnl\|rheMac2\|chr7 (118054504-118055176)