Non-Coding RNA Search

Ss1.1-rrec24_n20.5

Sequence:


               
               GTTTCATAATTTAAACACCATATGTGTCGTATGATTATTTTTAAGGCCTTCACCAGGTTC
TGGGGTTTTTTTTTAAGGCATCATTCAAAACTGCTTTTGAAATTGTGTGCTTGAAAATAT
TCTTGTCATAACATTAGATGTTTAAATACCAGCAAAAGGATTATTACCACCTCATTGAGA
GTTACCAGTATCCTAGCCAGCTTCAGAAAGTTTTTTTTTTTTAGCTTAACAGTACTTTTC
ATTTTATTTTTAGATAATTCAAATGCATAGGTAAATTATGTTTTCTTTAAGTGCTTAAGG
TAAACTCTTTTAAAGAAAATTAATATGTTATAGTTGAATCTTTGATACTTTTAAGTCTTT
ACCTTAGACTCTGTACATATGTTAAAAATAACTCTCGCTTCATCCGATGTGTGTGTCACC
GGCTGAATGACAGAAGAAACATATTTATGGTCATGAATGATGTGCTTTGTAAAAAAGCTT
CAAGTTATTAGGAAGCATACTGCGTTTTTTTTTTTAATCTTGTGTAATATTCTGTAATAC
TTTTATAGAACAATTCTGGCTTCGGGAAAGTCTAAAAGCAATATTCTTGAAATAAAAGGT
GTTTAAACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCATAATTTAAACACCATATGTGTCGTATGATTATTTTTAAGGCCTTCACCAGGTTC
TGGGGTTTTTTTTTAAGGCATCATTCAAAACTGCTTTTGAAATTGTGTGCTTGAAAATAT
TCTTGTCATAACATTAGATGTTTAAATACCAGCAAAAGGATTATTACCACCTCATTGAGA
GTTACCAGTATCCTAGCCAGCTTCAGAAAGTTTTTTTTTTTTAGCTTAACAGTACTTTTC
ATTTTATTTTTAGATAATTCAAATGCATAGGTAAATTATGTTTTCTTTAAGTGCTTAAGG
TAAACTCTTTTAAAGAAAATTAATATGTTATAGTTGAATCTTTGATACTTTTAAGTCTTT
ACCTTAGACTCTGTACATATGTTAAAAATAACTCTCGCTTCATCCGATGTGTGTGTCACC
GGCTGAATGACAGAAGAAACATATTTATGGTCATGAATGATGTGCTTTGTAAAAAAGCTT
CAAGTTATTAGGAAGCATACTGCGTTTTTTTTTTTAATCTTGTGTAATATTCTGTAATAC
TTTTATAGAACAATTCTGGCTTCGGGAAAGTCTAAAAGCAATATTCTTGAAATAAAAGGT
GTTTAAACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6JCU4_9HEMI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6JCU4_9HEMI

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               298-636, gnl|bosTau2|chr12 (19737815-19737481)
               

               
               298-636, gnl|Hg17|chr8 (70735414-70735700)
               

               
               298-636, gnl|Mm7|chr1 (13005893-13006181)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-636, gnl|bosTau2|chr12 (19737815-19737481)
               

               
               298-636, gnl|Hg17|chr8 (70735414-70735700)
               

               
               298-636, gnl|Mm7|chr1 (13005893-13006181)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.207814)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	298-636, gnl\|bosTau2\|chr12 (19737815-19737481)
	298-636, gnl\|Hg17\|chr8 (70735414-70735700)
	298-636, gnl\|Mm7\|chr1 (13005893-13006181)

	tes (0.207814)
	rec (0.17307)
	isp (0.150376)
	fat (0.147427)
	ret (0.128733)
	eru (0.120048)
	eje (0.0988338)