Non-Coding RNA Search

Ss1.1-rrec25_e6.5.5

Sequence:


               
               CTGTCTGTGACTGAGATGAGATCTGCTCTGGAGCCCCTTATCCATGGAGCCTAGGGTTCT
GTTGTCTTTCCAAGTGGTGAGAAGGAGCGCTTTCGTTTTTGTCTTAAACAGGTTGCTGCT
CTTAATGTTGGTCCTAGTGTCCCGGCCCCTTTTGCTGGGCCCACCTCTGTTCCTGACGGC
CAGTGTTGGGGATGAGGATGGAGGCGAGTCTCCTACTTGATGGCAGGGCCTCTCAAGAAC
CTCTGTGAAATACTTTCGAGGTGGTCTCCAGGTGACTGGACCTATCCTCTAGGTGGTGGT
ACAGCGTGGCTGTGAGGCCAGAGCCTCCTTCCTCACTCTCACACTCCCAAGCCAGGTGGG
TGTCCTGGCCCCGCGACAGTGATGGTGGTCTCTAATTCCCACCTTGGATGGCAGAATCCA
TCTCTCTGGACCACGGAAGCTGCCTGCCCATCCGGGCTTCTGATAATGCCTTTTCTTGGT
TTGAGGCCCAGCGCCAACATTGCCTTGGTGCCTCGAAGACCCTGCTTTTGTGTCTGATTT
CTGTCCTCCTTAGCCTTTACTCACTGTATCATAGTGTACATTTCATGCTTTGTAGCAGTG
AAGTTTTCTGAACACAGTATTCAGAGCTGTGTACATAAACCTAAATAAGCACAAATGACA
TGTATAGGTTTCATGAGCTGATTGTCATAAAGAATGCATTTTATAATTCAAATGATGTTG
TAGATTTACAATCTCCTATTTATTTTGTATCAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCTGTGACTGAGATGAGATCTGCTCTGGAGCCCCTTATCCATGGAGCCTAGGGTTCT
GTTGTCTTTCCAAGTGGTGAGAAGGAGCGCTTTCGTTTTTGTCTTAAACAGGTTGCTGCT
CTTAATGTTGGTCCTAGTGTCCCGGCCCCTTTTGCTGGGCCCACCTCTGTTCCTGACGGC
CAGTGTTGGGGATGAGGATGGAGGCGAGTCTCCTACTTGATGGCAGGGCCTCTCAAGAAC
CTCTGTGAAATACTTTCGAGGTGGTCTCCAGGTGACTGGACCTATCCTCTAGGTGGTGGT
ACAGCGTGGCTGTGAGGCCAGAGCCTCCTTCCTCACTCTCACACTCCCAAGCCAGGTGGG
TGTCCTGGCCCCGCGACAGTGATGGTGGTCTCTAATTCCCACCTTGGATGGCAGAATCCA
TCTCTCTGGACCACGGAAGCTGCCTGCCCATCCGGGCTTCTGATAATGCCTTTTCTTGGT
TTGAGGCCCAGCGCCAACATTGCCTTGGTGCCTCGAAGACCCTGCTTTTGTGTCTGATTT
CTGTCCTCCTTAGCCTTTACTCACTGTATCATAGTGTACATTTCATGCTTTGTAGCAGTG
AAGTTTTCTGAACACAGTATTCAGAGCTGTGTACATAAACCTAAATAAGCACAAATGACA
TGTATAGGTTTCATGAGCTGATTGTCATAAAGAATGCATTTTATAATTCAAATGATGTTG
TAGATTTACAATCTCCTATTTATTTTGTATCAATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               3-271, - strand, RNAz p=0.915666
               

               
               311-430, - strand, RNAz p=0.985531

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-271, - strand, RNAz p=0.915666
               

               
               311-430, - strand, RNAz p=0.985531

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-756, gnl|bosTau2|chr26 (17504566-17505310)
               

               
               3-756, gnl|Hg17|chr10 (104832323-104833057)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-756, gnl|bosTau2|chr26 (17504566-17505310)
               

               
               3-756, gnl|Hg17|chr10 (104832323-104833057)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cov (0.132153)

	3-271, - strand, RNAz p=0.915666
	311-430, - strand, RNAz p=0.985531

	3-756, gnl\|bosTau2\|chr26 (17504566-17505310)
	3-756, gnl\|Hg17\|chr10 (104832323-104833057)