Non-Coding RNA Search

Ss1.1-rrec25_h13.5

Sequence:


               
               AACTGGGGGGAAGAATGCATGTATGATACTCCATAAATTCAACGTTCTTTAAGAAATAAA
TTACAAACAAGCTCCATCTTCAGTAGTATTAATACACCAAGCCTTGGATTTTATATTTAA
TATAGGACTTAATTATTTTGGTTACTTATTCATATGGTTCCTAGCTTTTAAGGGCTAGCT
CTAAGATTATTCTCGTGAGAAATGTTGAATTTATGAGGAATGGATCTTGAGGCTCTGAAA
ATGGTTAATTTCTCTAATAAAAACATCAATGTCCAAACCTTTTTTCATAGGGATAGACAT
TAGCAAGCTGGACAAATCAATCATAAAGTATTTGTCTGTTGCTGATTGATACAAAATCCT
TGGTGTGTAATTCTCAATTTACCACTATAGCACAAGTATTATTATCTCAGTGGATTATTT
GAAGTAACATTTGAAAGATGGGTTCATCTGTGTTTGCTCTTTAAAATTTTTTTTTTTCCT
GACTCCAAGTTGGCTTTGCATCTACCAGAGTAAATAAATTCTTCAGCTGCCTTATTAGGA
GTGCTTTGAGGGTAACACCTATTCTGCTTTTCATCTTGTATTTAGTTTACTGTATTTAAG
TATTTGATTTCAGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGGGGGGAAGAATGCATGTATGATACTCCATAAATTCAACGTTCTTTAAGAAATAAA
TTACAAACAAGCTCCATCTTCAGTAGTATTAATACACCAAGCCTTGGATTTTATATTTAA
TATAGGACTTAATTATTTTGGTTACTTATTCATATGGTTCCTAGCTTTTAAGGGCTAGCT
CTAAGATTATTCTCGTGAGAAATGTTGAATTTATGAGGAATGGATCTTGAGGCTCTGAAA
ATGGTTAATTTCTCTAATAAAAACATCAATGTCCAAACCTTTTTTCATAGGGATAGACAT
TAGCAAGCTGGACAAATCAATCATAAAGTATTTGTCTGTTGCTGATTGATACAAAATCCT
TGGTGTGTAATTCTCAATTTACCACTATAGCACAAGTATTATTATCTCAGTGGATTATTT
GAAGTAACATTTGAAAGATGGGTTCATCTGTGTTTGCTCTTTAAAATTTTTTTTTTTCCT
GACTCCAAGTTGGCTTTGCATCTACCAGAGTAAATAAATTCTTCAGCTGCCTTATTAGGA
GTGCTTTGAGGGTAACACCTATTCTGCTTTTCATCTTGTATTTAGTTTACTGTATTTAAG
TATTTGATTTCAGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               97-663, gnl|bosTau2|chr19 (5142206-5142789)
               

               
               97-663, gnl|Hg17|chr17 (55381994-55382574)
               

               
               97-663, gnl|Mm7|chr11 (86569511-86568917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-663, gnl|bosTau2|chr19 (5142206-5142789)
               

               
               97-663, gnl|Hg17|chr17 (55381994-55382574)
               

               
               97-663, gnl|Mm7|chr11 (86569511-86568917)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	97-663, gnl\|bosTau2\|chr19 (5142206-5142789)
	97-663, gnl\|Hg17\|chr17 (55381994-55382574)
	97-663, gnl\|Mm7\|chr11 (86569511-86568917)

	fco (0.314416)
	mgp (0.230681)
	rec (0.17307)
	fhi (0.169578)
	lun (0.150489)
	ret (0.128733)
	tra (0.123092)