Non-Coding RNA Search

Ss1.1-rrec25_k18.5

Sequence:


               
               GCAGCTATTTCTGATAAGGAGACGAAGAAAACATACTTCTTCGTAGAGGACAAATACTGG
AGATTTGATGAGAAGAGACAATCCATGGAGCCAGGTTTTCCCAAGCAAATAGTGGAAGAC
TTTCCAGGGGTTGAGCCAAAAGTGGATGCTGTCTTTGAAGCATTTGGGTTTTTCTATTTC
TTCAATGGATCTTCGCAGTTCGAGTTTGACCCAAATGCAAAGAAAGTGACACATGTTTTG
AAGAGTAACAAATGGTTGAATTGTTAGGAGACATGCTTAGATGACATAACATGGACATTT
TAAATGAAGCTAACAGCTCTTCAGCTGAGTCTCTGTGACTCATTTTCTCCTGAGTGTGCA
GTGACGGAGAGCATGACATCTGTCTTTTGAGTTGGCTTCACATATTACAGGGCATTCAAA
GGGGCTGTGAGCTTGTACTTTGGACACATGGGGTAGCCTTCCACAAGGAAGGGGGAAGCA
CTCATGCAGCAGACAGGCAACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTATTTCTGATAAGGAGACGAAGAAAACATACTTCTTCGTAGAGGACAAATACTGG
AGATTTGATGAGAAGAGACAATCCATGGAGCCAGGTTTTCCCAAGCAAATAGTGGAAGAC
TTTCCAGGGGTTGAGCCAAAAGTGGATGCTGTCTTTGAAGCATTTGGGTTTTTCTATTTC
TTCAATGGATCTTCGCAGTTCGAGTTTGACCCAAATGCAAAGAAAGTGACACATGTTTTG
AAGAGTAACAAATGGTTGAATTGTTAGGAGACATGCTTAGATGACATAACATGGACATTT
TAAATGAAGCTAACAGCTCTTCAGCTGAGTCTCTGTGACTCATTTTCTCCTGAGTGTGCA
GTGACGGAGAGCATGACATCTGTCTTTTGAGTTGGCTTCACATATTACAGGGCATTCAAA
GGGGCTGTGAGCTTGTACTTTGGACACATGGGGTAGCCTTCCACAAGGAAGGGGGAAGCA
CTCATGCAGCAGACAGGCAACTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               166-504, gnl|bosTau2|chr12 (3418766-3418412)
               

               
               166-504, gnl|Hg17|chr11 (102212168-102211794)
               

               
               166-504, gnl|Mm7|chr9 (7453712-7454049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-504, gnl|bosTau2|chr12 (3418766-3418412)
               

               
               166-504, gnl|Hg17|chr11 (102212168-102211794)
               

               
               166-504, gnl|Mm7|chr9 (7453712-7454049)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               rec (0.17307)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               rec (0.17307)

	166-504, gnl\|bosTau2\|chr12 (3418766-3418412)
	166-504, gnl\|Hg17\|chr11 (102212168-102211794)
	166-504, gnl\|Mm7\|chr9 (7453712-7454049)