Non-Coding RNA Search

Ss1.1-rrec26_n18.5

Sequence:


               
               GCTCAGCCATGAGACTTCTCATCTTGGCCTTCCTCGTGATCTGCTGTCTCACTGCATACA
CTGTGGAAGCTGTGGGGAGCGAAGTCCTAGAGAAGAGCATCTGTGTGAGTCTAACTACCC
GGCGACTGCCAGTTAAAAACATCAAGACCTACACCATCAAGGAGGGCTCCATGAAAGCAG
TGATATTTATTACCAGGCGTGGCCTTAAAGTCTGTGCTGATCCACATGTTGAATGGGTGA
AAAAAGCAGTGCAAACAATAGACAAATCCAACAGAGGAAACCAGGCCAAACCTACAGGAG
CCCAGCAAACTACCAATACAGCTGTAACCCTGACTGGGTAGTGGCTTTCTGGCACCTTGT
CCCCTCACTGCCAGCCAGCTCATTTCCCTTTAAAGTTCATGGACTAATTACATTCTGTAT
AACTTTCATGAAAGTGCTGCATGAGTCAAATTATTTTCTTATATTTTTATTTTTCTATGT
CTTTCATATTCATTTGGATGCTCTAATTAATAAATATTTATTATTAAGAATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGCCATGAGACTTCTCATCTTGGCCTTCCTCGTGATCTGCTGTCTCACTGCATACA
CTGTGGAAGCTGTGGGGAGCGAAGTCCTAGAGAAGAGCATCTGTGTGAGTCTAACTACCC
GGCGACTGCCAGTTAAAAACATCAAGACCTACACCATCAAGGAGGGCTCCATGAAAGCAG
TGATATTTATTACCAGGCGTGGCCTTAAAGTCTGTGCTGATCCACATGTTGAATGGGTGA
AAAAAGCAGTGCAAACAATAGACAAATCCAACAGAGGAAACCAGGCCAAACCTACAGGAG
CCCAGCAAACTACCAATACAGCTGTAACCCTGACTGGGTAGTGGCTTTCTGGCACCTTGT
CCCCTCACTGCCAGCCAGCTCATTTCCCTTTAAAGTTCATGGACTAATTACATTCTGTAT
AACTTTCATGAAAGTGCTGCATGAGTCAAATTATTTTCTTATATTTTTATTTTTCTATGT
CTTTCATATTCATTTGGATGCTCTAATTAATAAATATTTATTATTAAGAATAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57164253|ref|NP_001009427.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57164253|ref|NP_001009427.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               177-531, gnl|bosTau2|chr16 (24607535-24607177)
               

               
               177-531, gnl|Hg17|chr1 (165242025-165241660)
               

               
               177-531, gnl|Mm7|chr1 (164899781-164899462)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-531, gnl|bosTau2|chr16 (24607535-24607177)
               

               
               177-531, gnl|Hg17|chr1 (165242025-165241660)
               

               
               177-531, gnl|Mm7|chr1 (164899781-164899462)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)

	177-531, gnl\|bosTau2\|chr16 (24607535-24607177)
	177-531, gnl\|Hg17\|chr1 (165242025-165241660)
	177-531, gnl\|Mm7\|chr1 (164899781-164899462)

	jej (0.197844)
	rec (0.17307)
	csp (0.161186)
	lnt (0.142308)
	che (0.136314)