Non-Coding RNA Search

Ss1.1-rrec28_p13.5

Sequence:


               
               TGGTGGTGATCAAAACTATAGTGGCTATGGCGGCTATGATTATACTGGGTATAACTATGG
GAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAGAGCACTTATGGCAA
GGCATCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCATACTAAAGGGGGACATT
GGAGAAAACAGGTGTGTATAAGCGTTCGAGAAACCAGTGGAAATGTCTAATTTAATTTAA
AGATCAATAGACAAATGAAAAATAAGTAAAAACAAAATATCATGTAGTCTGTTTTTACTC
AATTGTTTACTTTTTAACTTGCATGCCATTTTAAATCCAGTTCCATACAACGCTCCGCCG
CCGCCGCTGCCGCGACTCGGACTGCGCGCCCGCACCCTCCGGCCGACAACCCCGCCGCCA
TGGAGGACATGAACGAGTACAGCAACATAGAGGAGTTCGCAGAGGGGTCCAAGATCAACG
CGAGCAAAAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAA
GCAAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTCGTAGACTGCACAATTA
AAACAGATCCAGTCACTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTG
CTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGGATGGCAAATTGATAGACC
CTAAAAGGGCCAAAGCTTTAAAAGGGAAGGAACCCCCAAAAAAGGTTTTTGTGGGCGGAT
TGAGCCCAGATACTTCAGAAGAACAAATCAAAGAATACTTTGGAGCCTTTGGAGAGATTG
AAAATATTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGTTTTTGTTTTATTA
CGTACACAGACGAAGAGCCAGTAAAGAAATTGTTAGAAAGCCGATATCATCAAATTGGTT
CTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTGTATAGGCAGCAACAGCAAC
AACAGAAAGGAGGAAGAGGTGCTGCAGCTGGCGGACGAGGTGGTACTAGGGGTCGTGGAC
GAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAA
ATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGCTATGATTATA
CTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAAC
AGAGCACTTATGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCAT
ACTAAAGGGGGACATTGGAGAAAACAGGAGGATTTTGCTAGCGCAACCCATCTTGCAGAA
CAACATTGAAGATTGGTCTTCTGTTGATCTAAGATGATTATTTTGTAAAAGACTTTCTAG
TGTACAAGACACAACTGTGTCCAACTGTATATAGCCGCCAATTAGTTTTCTTTGTTTTTA
CTTTGTCTTTTGCTATCTGTGTTATAACTCAATGTGGATTTGTGTTTATACAAATTTTAT
TTGTATGATTTCATGTTAAACCTCAAATAAATGCTTCCTTATGTGATTAAAAAAAAAAAA
TCTGTGTTATAACTCAATGTGGATTTGTGTTTATACATAAGCAATAATTAAGGCACAGTT
TATTTTGTAGGGAGTATTGATCCATAGGGAGAAACTGGTCCTTTATGAATAGCCAGCTAC
AGTGTCTACCCTGTTCCCTTTTTGTTACATGTATTCTATGCTCAGAGGCTTCATTTCCCT
GTTAATTGAAGCTTCCACCATACCTTTTAGTAATGTTTCCTCTGTATATCTGGAGATTTT
GTCATGAAGCTTGTGTGGCCTGGTTAGAGTGTTGTGATTAGTGCAGGCAGCTTTCTAGTA
GGCCATGAGTCTTTCTGTTGTTTTGGAAAGTGACTCTTTATAATGGCGCAAAGCATTGTT
GGTAGCTCGTTTTATGAACAGAAGAGATGGTGCTTTGTTCTTGTCTCTGGAGAGGCAGTT
GTTGGACTGCTGCATTCTCATCAGTGGTCTGCTAAAGAGCTTTGGCTAATCATAATACCA
TCACTTTGTTTCTTGATTAAAATGTCCAGATATATGGGAGGAAGAGACTTAAATTGTGTG
ATAGGAGCTGCAGCTTAAGAAGATCAGTTTTAGTTACATTTAACAGAAGAATTTTGGCAG
ATAGATACGGGGTAATTAGAGTTTGAATAAAAGTTAGATTAAAATATTTGAAGTAGTGGC
TGAGTAAATACATTGTATGGTATTTTGTTGGTATTATGTCACAGCAAGCACCAAGCTGAA
CAGAATGATTCTGTTGGGGCATCGTTAGGAAGCTGTACTGGATGTTAACTGTCTGTGAGT
TTAGGAGACGTCGTGGTGAAGTAGGTTTCATCATTTTTAGTACAGTTAGTGCATGAGCGG
GGTAGTTGACGCATATCCATAGTCAGACCTAGGGAGCAATAGTGGGGAAAGGTATACTTT
AAATCTTAGGTGAGCACAAGTCTGAGCGTGACCGAGTCACACCAGTACAGCAGGTCTTCC
TGGTGCGCTAAAGAAGCGGCTCTAGGTCTAGATGTGCAGGGTATCCTGGATAAATTCGGG
TTCCAAATCTTACATTCAGTGTAGTGAATGAATCTAAGATTTTTGTTCTGTTTCTGTGGT
TTCATGTTAGCTGTTAGGATTGGCATACCTGTTCACACGTGGAGTAGGTAGTTGACCTCA
CCTTTAACAAGTGTAAATTTTTTATGTTAACCTGCCTTTTTAAATTTTATTTGGTGCCTG
CAACTTTCCTTTGTTCCAATGTTTGACCTTGCTGGGCTATCAGTTACAATGCTTTTGGCC
TTGCTCCTGTTTTGCTGTTTGACCTTACACCTAGGCCAAATGTTGGCTATTGCAAGGAAT
TGTTTATTCTTTCAACGTGCAACTTTAGGGAAACAGGAGATTCATTTTTAAGTTGTTGTC
AGTAGGTGCAGCGTCTTTAGAGCAGTGAATCTTGTACGTTCAAGTTTATGATTAGGTGAC
AAGTTGACATTGAGATTGTCCTTCCCCTGATCAAAAATGAATAAAGGCTTTTTAAACAAA
ATCCAAACTCTTCAATCAAGTCTTGATATATATGACGGAAGAAATACACGACATCTAGAA
ATTACTGTCTGAGATGTATTAGAAAAACTGAAGTGCCTATGACAAACATCCTTGACCAGC
CTGTACATTAAATACACTTTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGGTGATCAAAACTATAGTGGCTATGGCGGCTATGATTATACTGGGTATAACTATGG
GAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAACAGAGCACTTATGGCAA
GGCATCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCATACTAAAGGGGGACATT
GGAGAAAACAGGTGTGTATAAGCGTTCGAGAAACCAGTGGAAATGTCTAATTTAATTTAA
AGATCAATAGACAAATGAAAAATAAGTAAAAACAAAATATCATGTAGTCTGTTTTTACTC
AATTGTTTACTTTTTAACTTGCATGCCATTTTAAATCCAGTTCCATACAACGCTCCGCCG
CCGCCGCTGCCGCGACTCGGACTGCGCGCCCGCACCCTCCGGCCGACAACCCCGCCGCCA
TGGAGGACATGAACGAGTACAGCAACATAGAGGAGTTCGCAGAGGGGTCCAAGATCAACG
CGAGCAAAAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAA
GCAAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTCGTAGACTGCACAATTA
AAACAGATCCAGTCACTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTG
CTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGGATGGCAAATTGATAGACC
CTAAAAGGGCCAAAGCTTTAAAAGGGAAGGAACCCCCAAAAAAGGTTTTTGTGGGCGGAT
TGAGCCCAGATACTTCAGAAGAACAAATCAAAGAATACTTTGGAGCCTTTGGAGAGATTG
AAAATATTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGTTTTTGTTTTATTA
CGTACACAGACGAAGAGCCAGTAAAGAAATTGTTAGAAAGCCGATATCATCAAATTGGTT
CTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAGGTGTATAGGCAGCAACAGCAAC
AACAGAAAGGAGGAAGAGGTGCTGCAGCTGGCGGACGAGGTGGTACTAGGGGTCGTGGAC
GAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAA
ATTACAATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGCTATGATTATA
CTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGCCAAC
AGAGCACTTATGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCAT
ACTAAAGGGGGACATTGGAGAAAACAGGAGGATTTTGCTAGCGCAACCCATCTTGCAGAA
CAACATTGAAGATTGGTCTTCTGTTGATCTAAGATGATTATTTTGTAAAAGACTTTCTAG
TGTACAAGACACAACTGTGTCCAACTGTATATAGCCGCCAATTAGTTTTCTTTGTTTTTA
CTTTGTCTTTTGCTATCTGTGTTATAACTCAATGTGGATTTGTGTTTATACAAATTTTAT
TTGTATGATTTCATGTTAAACCTCAAATAAATGCTTCCTTATGTGATTAAAAAAAAAAAA
TCTGTGTTATAACTCAATGTGGATTTGTGTTTATACATAAGCAATAATTAAGGCACAGTT
TATTTTGTAGGGAGTATTGATCCATAGGGAGAAACTGGTCCTTTATGAATAGCCAGCTAC
AGTGTCTACCCTGTTCCCTTTTTGTTACATGTATTCTATGCTCAGAGGCTTCATTTCCCT
GTTAATTGAAGCTTCCACCATACCTTTTAGTAATGTTTCCTCTGTATATCTGGAGATTTT
GTCATGAAGCTTGTGTGGCCTGGTTAGAGTGTTGTGATTAGTGCAGGCAGCTTTCTAGTA
GGCCATGAGTCTTTCTGTTGTTTTGGAAAGTGACTCTTTATAATGGCGCAAAGCATTGTT
GGTAGCTCGTTTTATGAACAGAAGAGATGGTGCTTTGTTCTTGTCTCTGGAGAGGCAGTT
GTTGGACTGCTGCATTCTCATCAGTGGTCTGCTAAAGAGCTTTGGCTAATCATAATACCA
TCACTTTGTTTCTTGATTAAAATGTCCAGATATATGGGAGGAAGAGACTTAAATTGTGTG
ATAGGAGCTGCAGCTTAAGAAGATCAGTTTTAGTTACATTTAACAGAAGAATTTTGGCAG
ATAGATACGGGGTAATTAGAGTTTGAATAAAAGTTAGATTAAAATATTTGAAGTAGTGGC
TGAGTAAATACATTGTATGGTATTTTGTTGGTATTATGTCACAGCAAGCACCAAGCTGAA
CAGAATGATTCTGTTGGGGCATCGTTAGGAAGCTGTACTGGATGTTAACTGTCTGTGAGT
TTAGGAGACGTCGTGGTGAAGTAGGTTTCATCATTTTTAGTACAGTTAGTGCATGAGCGG
GGTAGTTGACGCATATCCATAGTCAGACCTAGGGAGCAATAGTGGGGAAAGGTATACTTT
AAATCTTAGGTGAGCACAAGTCTGAGCGTGACCGAGTCACACCAGTACAGCAGGTCTTCC
TGGTGCGCTAAAGAAGCGGCTCTAGGTCTAGATGTGCAGGGTATCCTGGATAAATTCGGG
TTCCAAATCTTACATTCAGTGTAGTGAATGAATCTAAGATTTTTGTTCTGTTTCTGTGGT
TTCATGTTAGCTGTTAGGATTGGCATACCTGTTCACACGTGGAGTAGGTAGTTGACCTCA
CCTTTAACAAGTGTAAATTTTTTATGTTAACCTGCCTTTTTAAATTTTATTTGGTGCCTG
CAACTTTCCTTTGTTCCAATGTTTGACCTTGCTGGGCTATCAGTTACAATGCTTTTGGCC
TTGCTCCTGTTTTGCTGTTTGACCTTACACCTAGGCCAAATGTTGGCTATTGCAAGGAAT
TGTTTATTCTTTCAACGTGCAACTTTAGGGAAACAGGAGATTCATTTTTAAGTTGTTGTC
AGTAGGTGCAGCGTCTTTAGAGCAGTGAATCTTGTACGTTCAAGTTTATGATTAGGTGAC
AAGTTGACATTGAGATTGTCCTTCCCCTGATCAAAAATGAATAAAGGCTTTTTAAACAAA
ATCCAAACTCTTCAATCAAGTCTTGATATATATGACGGAAGAAATACACGACATCTAGAA
ATTACTGTCTGAGATGTATTAGAAAAACTGAAGTGCCTATGACAAACATCCTTGACCAGC
CTGTACATTAAATACACTTTCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7KZ75_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7KZ75_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1344-2950, - strand, RNAz p=0.979333

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1344-2950, - strand, RNAz p=0.979333

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-192, gnl|bosTau2|chr12 (6734549-6734739)
               

               
               1-192, gnl|Hg17|chr4 (83704892-83704368)
               

               
               1-192, gnl|Mm7|chr5 (99251359-99250869)
               


               
               345-1783, gnl|bosTau2|chr12 (6733736-6735179)
               

               
               345-1783, gnl|Hg17|chr4 (83707740-83702785)
               

               
               345-1783, gnl|Mm7|chr5 (99253661-99249393)
               


               
               1786-3131, gnl|bosTau2|chr12 (6735320-6736693)
               

               
               1786-3131, gnl|Hg17|chr4 (83702778-83701533)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-192, gnl|bosTau2|chr12 (6734549-6734739)
               

               
               1-192, gnl|Hg17|chr4 (83704892-83704368)
               

               
               1-192, gnl|Mm7|chr5 (99251359-99250869)
               


               
               345-1783, gnl|bosTau2|chr12 (6733736-6735179)
               

               
               345-1783, gnl|Hg17|chr4 (83707740-83702785)
               

               
               345-1783, gnl|Mm7|chr5 (99253661-99249393)
               


               
               1786-3131, gnl|bosTau2|chr12 (6735320-6736693)
               

               
               1786-3131, gnl|Hg17|chr4 (83702778-83701533)

Expressed library(ies): 74 entry(ies)

More info

Expressed library(ies): 74 entry(ies)

Help | Less info


               
               eye (2.04604)
               

               
               liv (1.9017)
               

               
               ova (1.80785)
               

               
               sug (1.65479)
               

               
               thg (1.64828)
               

               
               ski (1.61409)
               

               
               fty (1.40672)
               

               
               spl (1.28866)
               

               
               tbr (1.23343)
               

               
               tra (1.23092)
               

               
               sme (1.22175)
               

               
               isp (1.20301)
               

               
               cte (1.17096)
               

               
               kid (1.16762)
               

               
               mgp (1.1534)
               

               
               ret (1.02987)
               

               
               lin (1.01922)
               

               
               che (0.954198)
               

               
               fat (0.884564)
               

               
               sin (0.874738)
               

               
               bla (0.87043)
               

               
               tes (0.831255)
               

               
               nje (0.8296)
               

               
               mga (0.801025)
               

               
               lyg (0.798616)
               

               
               spc (0.793561)
               

               
               cmu (0.745573)
               

               
               sag (0.730861)
               

               
               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               eep (0.61282)
               

               
               pgl (0.592417)
               

               
               fce (0.543183)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               rec (0.519211)
               

               
               ese (0.506009)
               

               
               ebs (0.473205)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               bfe (0.449573)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               csk (0.422238)
               

               
               ssp (0.406559)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               nca (0.273748)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 74 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (2.04604)
               

               
               liv (1.9017)
               

               
               ova (1.80785)
               

               
               sug (1.65479)
               

               
               thg (1.64828)
               

               
               ski (1.61409)
               

               
               fty (1.40672)
               

               
               spl (1.28866)
               

               
               tbr (1.23343)
               

               
               tra (1.23092)
               

               
               sme (1.22175)
               

               
               isp (1.20301)
               

               
               cte (1.17096)
               

               
               kid (1.16762)
               

               
               mgp (1.1534)
               

               
               ret (1.02987)
               

               
               lin (1.01922)
               

               
               che (0.954198)
               

               
               fat (0.884564)
               

               
               sin (0.874738)
               

               
               bla (0.87043)
               

               
               tes (0.831255)
               

               
               nje (0.8296)
               

               
               mga (0.801025)
               

               
               lyg (0.798616)
               

               
               spc (0.793561)
               

               
               cmu (0.745573)
               

               
               sag (0.730861)
               

               
               cbe (0.717703)
               

               
               gul (0.710353)
               

               
               eep (0.61282)
               

               
               pgl (0.592417)
               

               
               fce (0.543183)
               

               
               mgm (0.541028)
               

               
               nmm (0.531209)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               rec (0.519211)
               

               
               ese (0.506009)
               

               
               ebs (0.473205)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               bfe (0.449573)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               csk (0.422238)
               

               
               ssp (0.406559)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               sto (0.359648)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               lun (0.300978)
               

               
               nca (0.273748)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-192, gnl\|bosTau2\|chr12 (6734549-6734739)
	1-192, gnl\|Hg17\|chr4 (83704892-83704368)
	1-192, gnl\|Mm7\|chr5 (99251359-99250869)

	345-1783, gnl\|bosTau2\|chr12 (6733736-6735179)
	345-1783, gnl\|Hg17\|chr4 (83707740-83702785)
	345-1783, gnl\|Mm7\|chr5 (99253661-99249393)

	1786-3131, gnl\|bosTau2\|chr12 (6735320-6736693)
	1786-3131, gnl\|Hg17\|chr4 (83702778-83701533)

	eye (2.04604)
	liv (1.9017)
	ova (1.80785)
	sug (1.65479)
	thg (1.64828)
	ski (1.61409)
	fty (1.40672)
	spl (1.28866)
	tbr (1.23343)
	tra (1.23092)
	sme (1.22175)
	isp (1.20301)
	cte (1.17096)
	kid (1.16762)
	mgp (1.1534)
	ret (1.02987)
	lin (1.01922)
	che (0.954198)
	fat (0.884564)
	sin (0.874738)
	bla (0.87043)
	tes (0.831255)
	nje (0.8296)
	mga (0.801025)
	lyg (0.798616)
	spc (0.793561)
	cmu (0.745573)
	sag (0.730861)
	cbe (0.717703)
	gul (0.710353)
	eep (0.61282)
	pgl (0.592417)
	fce (0.543183)
	mgm (0.541028)
	nmm (0.531209)
	ill (0.526778)
	fbs (0.526039)
	rec (0.519211)
	ese (0.506009)
	ebs (0.473205)
	fco (0.471624)
	ece (0.45861)
	bfe (0.449573)
	pty (0.428143)
	nms (0.427716)
	csk (0.422238)
	ssp (0.406559)
	pla (0.401016)
	aor (0.390549)
	col (0.390016)
	sto (0.359648)
	med (0.348756)
	duo (0.345602)
	ecc (0.345105)
	cut (0.339847)
	cje (0.330469)
	lun (0.300978)
	nca (0.273748)
	eru (0.240096)
	pan (0.23596)
	hea (0.204499)
	eje (0.197668)
	ldo (0.194005)
	nlu (0.191681)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	ste (0.135208)
	ute (0.132784)
	cbl (0.114797)
	cty (0.10408)