Non-Coding RNA Search

Ss1.1-rrec30_b9.5

Sequence:


               
               AATCGCAAAAGGTGACAGTCTTCTATTTTTGATATTTGTCCAAACAGGATATACAATTGA
ATAAAAGAGTTTAGGAACTGGTTTCTGCTTTAATACAACAACAAAATTCTTATAAAAGTT
GTCCAAATATAGTAATCTTTTCCTCTTGTCTGATTAAGATTTAAAACACAAGTTTTCACT
TTGTGAGTTGGGTTTTAAAGTTTCTTGTGTGTCTGCTGAAGGAAATCATTGTTAACCAGT
AAAAGGGGAAATTTTATTTAAATTGCATCTATTAATCTTTTTATCTGGAACTTTGTACAC
TTTTCCACTTTCAAAACTTATATTACATACAGCAAAGTTTATTTAAAATTGTCATACCAG
TTAAAAGTATTACCATGAAATTGCTAAGAGTATTAACAAGCCCAGCTTCATTCTTGATAA
CAGTTACTAGGAAAGGATTGCTTCACTGGCTTTATAATTCGAAAGTTATGTTTGTTAAAC
ACCCTGTCAGAGCAGAGTCACTTTTCAGTATTACAGATTCTTGTATTGTTGTGTTAAGAT
TTGCCTGTGCTTTGGAACATTCATAGGACACACTTTCTTTTGGAATGTATTTGATTGATA
AGAAAGTTTAAACACTGTTTTCACCTCAATGTAGAAATACAGTGGTTTTGTTTTTTTTTT
TTTTTAGGGCTGCCAAAATAAAATACTCATTTTTGCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCGCAAAAGGTGACAGTCTTCTATTTTTGATATTTGTCCAAACAGGATATACAATTGA
ATAAAAGAGTTTAGGAACTGGTTTCTGCTTTAATACAACAACAAAATTCTTATAAAAGTT
GTCCAAATATAGTAATCTTTTCCTCTTGTCTGATTAAGATTTAAAACACAAGTTTTCACT
TTGTGAGTTGGGTTTTAAAGTTTCTTGTGTGTCTGCTGAAGGAAATCATTGTTAACCAGT
AAAAGGGGAAATTTTATTTAAATTGCATCTATTAATCTTTTTATCTGGAACTTTGTACAC
TTTTCCACTTTCAAAACTTATATTACATACAGCAAAGTTTATTTAAAATTGTCATACCAG
TTAAAAGTATTACCATGAAATTGCTAAGAGTATTAACAAGCCCAGCTTCATTCTTGATAA
CAGTTACTAGGAAAGGATTGCTTCACTGGCTTTATAATTCGAAAGTTATGTTTGTTAAAC
ACCCTGTCAGAGCAGAGTCACTTTTCAGTATTACAGATTCTTGTATTGTTGTGTTAAGAT
TTGCCTGTGCTTTGGAACATTCATAGGACACACTTTCTTTTGGAATGTATTTGATTGATA
AGAAAGTTTAAACACTGTTTTCACCTCAATGTAGAAATACAGTGGTTTTGTTTTTTTTTT
TTTTTAGGGCTGCCAAAATAAAATACTCATTTTTGCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-702, gnl|bosTau2|chr10 (29978432-29979125)
               

               
               5-702, gnl|Hg17|chr14 (49159098-49159792)
               

               
               5-702, gnl|Mm7|chr12 (67127506-67128203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-702, gnl|bosTau2|chr10 (29978432-29979125)
               

               
               5-702, gnl|Hg17|chr14 (49159098-49159792)
               

               
               5-702, gnl|Mm7|chr12 (67127506-67128203)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               rec (0.519211)
               

               
               sin (0.174948)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               sin (0.174948)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

	5-702, gnl\|bosTau2\|chr10 (29978432-29979125)
	5-702, gnl\|Hg17\|chr14 (49159098-49159792)
	5-702, gnl\|Mm7\|chr12 (67127506-67128203)

	rec (0.519211)
	sin (0.174948)
	ste (0.135208)
	kid (0.129735)
	ebs (0.118301)