Non-Coding RNA Search

Ss1.1-rrec34_m12.5

Sequence:


               
               CCTCATCTTCACCACTTGGCTTGAGATCCACAGCTGTAAAACCATATATTCTTGAGGAAG
GACAAAACTGGAAATTTAAACTGGGAGGACAAAAAAGGAATTAGATTAACATTCAGCTAT
GGGTGTTTAATTTTTAAAACATTGCTGTCAAAACCATAAACCCCTCCCCTATCCCAACAA
TAACAAAATCACTATACCAGCTTAGATGTTAAGTATGGGGTCTTGATAAATGTAAAAGCC
TGTGTACAAAAACCGTTTGGTTACCAAACCTAGTTTTTCAAAGGCTGCAAAAAACATCAC
TTTTCTATGTTTTATTTCCTCCTTAGGGCACAAAAATAATGAACTAAAGATTTTTGCAAT
TAATTATGGTGGCAACATATTTATAAGGTTTTTTGGCTTTTTTTTTGCGAAAAGAAACTA
TTGCTTTAAAATTATTCATGCTCT------------ATCTCAAATCAAACCTGGAATATA
CAACAACTTATCAAATATAACTTTTCAATATTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCATCTTCACCACTTGGCTTGAGATCCACAGCTGTAAAACCATATATTCTTGAGGAAG
GACAAAACTGGAAATTTAAACTGGGAGGACAAAAAAGGAATTAGATTAACATTCAGCTAT
GGGTGTTTAATTTTTAAAACATTGCTGTCAAAACCATAAACCCCTCCCCTATCCCAACAA
TAACAAAATCACTATACCAGCTTAGATGTTAAGTATGGGGTCTTGATAAATGTAAAAGCC
TGTGTACAAAAACCGTTTGGTTACCAAACCTAGTTTTTCAAAGGCTGCAAAAAACATCAC
TTTTCTATGTTTTATTTCCTCCTTAGGGCACAAAAATAATGAACTAAAGATTTTTGCAAT
TAATTATGGTGGCAACATATTTATAAGGTTTTTTGGCTTTTTTTTTGCGAAAAGAAACTA
TTGCTTTAAAATTATTCATGCTCT------------ATCTCAAATCAAACCTGGAATATA
CAACAACTTATCAAATATAACTTTTCAATATTATCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-504, gnl|bosTau2|chr1 (59508129-59508648)
               

               
               1-504, gnl|Hg17|chr14 (30644546-30645115)
               

               
               1-504, gnl|Mm7|chr12 (49759125-49759592)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr1 (59508129-59508648)
               

               
               1-504, gnl|Hg17|chr14 (30644546-30645115)
               

               
               1-504, gnl|Mm7|chr12 (49759125-49759592)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	1-504, gnl\|bosTau2\|chr1 (59508129-59508648)
	1-504, gnl\|Hg17\|chr14 (30644546-30645115)
	1-504, gnl\|Mm7\|chr12 (49759125-49759592)