Non-Coding RNA Search

Ss1.1-rret01_c24.5

Sequence:


               
               GCCGCTGGGGATATTTCTTTTTACAGAATGCTGGGATACTTCTGGGTTTTGGAATTATGT
TGCTTATCTCCATATTTGAACATAAAATTGTGTTTCGCATAAATTTCTAAGTAGGGCATA
AATGCTGAAGTAGCTTAAAGCTATAGTTTGCTTTCTCTAGTTTGAATAGGTCATAGGGAG
ATGAGAGTTTGTACGCTGTGATATGTCGCACTTAAGGTTAGTGGATTTTGTGATTTTTGT
ATAGACTATTGCCATTTGTTATGCTTATAAGGTCAGTTATGGTGGTAACATAAAGGTACG
TTTTAATATTTAAGTTATTCTATTTTGGGAATATGTTATATGTGCAATTGACCAATATTA
CCGGTTTATTGTATAAACAAGAGATTTGGCATGACATGTTCTGTATATTTCAGGAGAAAT
GTCTTTAATGTTTTAGAACTAATTTAATACAGTAATTCCTATGCTGGATTTTAGGCCTCT
GAAGAACTGCTAGTGTTTAGGAGTAAGAATACACATGAAGCCTAAAATACCGATAAAAGC
TTAAATTTAATTTAAGCTAAGAAATAGAAAGGGAGAAGAATCTGTATGAATTGAGAAGGC
ATAGATTTCTTATTAAAAAAAAAAATCACAAAACTGATTATAAAATAGAAGGAAAAAATT
AAGATTTAAATGAAGAAAGAAATATTAGTATAGAGCACATTCATAAACATTTTTGTCAGA
GTATTAATGTTCCCATAAAACCTTAGCACTTTTTACTAATTTAGTTGTACATTTAACTGT
GTATAATAGAAACGTCTAAATATATTTAATGAAGTCAAGCAAAGTATGTCATTTGACCAA
GAAATTGAAATTTTAAAATATTTGTGTGGAGATAAACCAGATGAGTAAGAGCCAGTTTAC
GTATTGCCAAAAGACTTGGATATCACCAAGCTATGTTTCACCCAAAGTTACATTATTGGA
TGACCTGGTTATTTGGCTTACTGAATGTTAGCATTGATATATATATATAAGGACGTTAAA
GTGATACTGGGTATAATTTGACTTCTTGGATTCAGAAAGTACTTTGTTATCTTTCAGTGC
TTCAATGTTGTTATGAGCAATTGTCATTTTTTATATAGTACTGTAGACATACTAGGGTTG
TGTGGCATTCTCTAGATATTGCTTTTCTACAAAATAAATTCCCCATGTCAACTTGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTGGGGATATTTCTTTTTACAGAATGCTGGGATACTTCTGGGTTTTGGAATTATGT
TGCTTATCTCCATATTTGAACATAAAATTGTGTTTCGCATAAATTTCTAAGTAGGGCATA
AATGCTGAAGTAGCTTAAAGCTATAGTTTGCTTTCTCTAGTTTGAATAGGTCATAGGGAG
ATGAGAGTTTGTACGCTGTGATATGTCGCACTTAAGGTTAGTGGATTTTGTGATTTTTGT
ATAGACTATTGCCATTTGTTATGCTTATAAGGTCAGTTATGGTGGTAACATAAAGGTACG
TTTTAATATTTAAGTTATTCTATTTTGGGAATATGTTATATGTGCAATTGACCAATATTA
CCGGTTTATTGTATAAACAAGAGATTTGGCATGACATGTTCTGTATATTTCAGGAGAAAT
GTCTTTAATGTTTTAGAACTAATTTAATACAGTAATTCCTATGCTGGATTTTAGGCCTCT
GAAGAACTGCTAGTGTTTAGGAGTAAGAATACACATGAAGCCTAAAATACCGATAAAAGC
TTAAATTTAATTTAAGCTAAGAAATAGAAAGGGAGAAGAATCTGTATGAATTGAGAAGGC
ATAGATTTCTTATTAAAAAAAAAAATCACAAAACTGATTATAAAATAGAAGGAAAAAATT
AAGATTTAAATGAAGAAAGAAATATTAGTATAGAGCACATTCATAAACATTTTTGTCAGA
GTATTAATGTTCCCATAAAACCTTAGCACTTTTTACTAATTTAGTTGTACATTTAACTGT
GTATAATAGAAACGTCTAAATATATTTAATGAAGTCAAGCAAAGTATGTCATTTGACCAA
GAAATTGAAATTTTAAAATATTTGTGTGGAGATAAACCAGATGAGTAAGAGCCAGTTTAC
GTATTGCCAAAAGACTTGGATATCACCAAGCTATGTTTCACCCAAAGTTACATTATTGGA
TGACCTGGTTATTTGGCTTACTGAATGTTAGCATTGATATATATATATAAGGACGTTAAA
GTGATACTGGGTATAATTTGACTTCTTGGATTCAGAAAGTACTTTGTTATCTTTCAGTGC
TTCAATGTTGTTATGAGCAATTGTCATTTTTTATATAGTACTGTAGACATACTAGGGTTG
TGTGGCATTCTCTAGATATTGCTTTTCTACAAAATAAATTCCCCATGTCAACTTGAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               865-981, - strand, RNAz p=0.971283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               865-981, - strand, RNAz p=0.971283

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               785-1210, gnl|bosTau2|chr22 (14841027-14840605)
               

               
               785-1210, gnl|Hg17|chr18 (31942908-31942492)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               785-1210, gnl|bosTau2|chr22 (14841027-14840605)
               

               
               785-1210, gnl|Hg17|chr18 (31942908-31942492)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ret (0.7724)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	785-1210, gnl\|bosTau2\|chr22 (14841027-14840605)
	785-1210, gnl\|Hg17\|chr18 (31942908-31942492)

	ret (0.7724)
	mgp (0.230681)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	spl (0.143184)
	ebs (0.118301)
	nbm (0.0993246)