Non-Coding RNA Search

Ss1.1-rret01_h11.5

Sequence:


               
               TGATCATGAAGGAGGACTATGAACTCATTAGTACCAAACCTACAAGAACCTCAAAAGTCA
GACAATTACTGGATACCACTGACATCCAAGGAGAAGAATTTGCCAGAGTTATAGTACAAA
AGTTGAAAGATAACAAGCAAATGGGACTCCAGCCTTACCCAGAAATACTTGTGGTTTCTC
GACCACCATCTTTAAATTTATTTTAGAATAAAACCTTATAAATAACTCTTTCTCAAGAAG
AAAAGTCAGTTTGTAAAAGGGTGTTTTATATTTCTTTTGCTCTGATAGTGTTTTTATGAG
ATCCATCTGAGTATTAGATATTTTAATGAAGTTTCTTCAGATAAATATTAGTCTCCTTCC
ATGGCATTACAGTATTTTTTAAATTAATAACAGTGGAAAGTTTATATTTTGTTACGTAGT
TCAATTTTTTTGTCTCTGGTTAATTGAAATTATTTTTTCAATGTACTAATTATATTTTTC
TTGTACATAACAATGTCTTCAGGTTTCATGTGTTTCTCATGGAAACCATTTTCATATTCA
CTTTCTTTGTGGATTATTTATTACTTGTCTAAGTGTGCATGGTTTTTTTTAAAGTGTACC
CTTTAGATTTAAATCAGAGATATTACAGCATTCCTACCCTACAGTCCCATGTTTCTGTCC
TCTCCAAAGGTTATTCATTAAACCCTGCTACCTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATCATGAAGGAGGACTATGAACTCATTAGTACCAAACCTACAAGAACCTCAAAAGTCA
GACAATTACTGGATACCACTGACATCCAAGGAGAAGAATTTGCCAGAGTTATAGTACAAA
AGTTGAAAGATAACAAGCAAATGGGACTCCAGCCTTACCCAGAAATACTTGTGGTTTCTC
GACCACCATCTTTAAATTTATTTTAGAATAAAACCTTATAAATAACTCTTTCTCAAGAAG
AAAAGTCAGTTTGTAAAAGGGTGTTTTATATTTCTTTTGCTCTGATAGTGTTTTTATGAG
ATCCATCTGAGTATTAGATATTTTAATGAAGTTTCTTCAGATAAATATTAGTCTCCTTCC
ATGGCATTACAGTATTTTTTAAATTAATAACAGTGGAAAGTTTATATTTTGTTACGTAGT
TCAATTTTTTTGTCTCTGGTTAATTGAAATTATTTTTTCAATGTACTAATTATATTTTTC
TTGTACATAACAATGTCTTCAGGTTTCATGTGTTTCTCATGGAAACCATTTTCATATTCA
CTTTCTTTGTGGATTATTTATTACTTGTCTAAGTGTGCATGGTTTTTTTTAAAGTGTACC
CTTTAGATTTAAATCAGAGATATTACAGCATTCCTACCCTACAGTCCCATGTTTCTGTCC
TCTCCAAAGGTTATTCATTAAACCCTGCTACCTACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr14 (46095206-46094513)
               

               
               1-696, gnl|Hg17|chr8 (90871565-90872254)
               

               
               1-696, gnl|Mm7|chr4 (16050921-16050281)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr14 (46095206-46094513)
               

               
               1-696, gnl|Hg17|chr8 (90871565-90872254)
               

               
               1-696, gnl|Mm7|chr4 (16050921-16050281)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               fty (0.351679)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

	1-696, gnl\|bosTau2\|chr14 (46095206-46094513)
	1-696, gnl\|Hg17\|chr8 (90871565-90872254)
	1-696, gnl\|Mm7\|chr4 (16050921-16050281)

	fty (0.351679)
	ret (0.257467)
	aor (0.195274)
	ton (0.1755)
	nco (0.161734)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	ste (0.135208)
	lyg (0.133103)
	thg (0.126791)