Non-Coding RNA Search

Ss1.1-rret01_j15.5

Sequence:


               
               TATGCTGAAGACAGAGAGCATTGTTTGAAGCAACAAAATGAAATGGAAATACTTAAAGAA
CAGCTGGCCAAGAAAGATGGTAGCCTCCAACAGTGGCGAGAAGAACGAGATCAACTGGTT
GCAGCTTTAGAAATACAGCTGAAAACACTGATCTCTAGTAACGCACAGAAAGATAATGAA
ATTGAGCAACTAAAAAAGATCACATCAGAGGCTTCTAAAACAGAAAAACAAACCATGGAT
GTCCAGCCCAGACCTATGAGTTCAGTGGATCCTGGCAAGGTTGAAACTGAACCTCAATCA
ACAAGTTTGGAAATTTCCAGGAATGAAGTAGAGGATGGATCTGTAGTCCTTGACTCTTGT
GAAGTGTCAACAGAAAATAACCGAACTAGTCGATTTCCAAAGCCTGAGTTAGAGATTCAG
TTTACACCTTTACAGCCAAACAAAATGGCCGTGAAACACCCGGGTTGTACCACACCCGTG
ACGGTTAAGATTCCCAAGGCCCGGAAGAGGAAGAGTAATGAGATGGAGGAGGACTTTGTG
AAATTTGAAAATAAGAAGAATGCGACACCCAGAACTAATTTGAAGTCCCCTATTTCTGAG
CATGTAAATTCTTCTGTCAAAAAAGAGCAAAAGGTTTCCACTCGCCCATCATCTAAGAAA
ACGTACTCCTTACGGAGTCAGGCATCCACAATCAGTATAAATGTGCCCACTAAGAAAAAA
GAAGGAGCGCTACAGAAATTGGGAGACTTCTTACAACATTCTCCAACTATTCTTCAATCA
AAAGCAAAGAAGATAATGGAAACAATGAGCTCTTCAAAGCTCTCAAATGTAGAAGTAAGT
AAAGAAACTGTGTCTCGACCAAAACGAGCCAAACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCTGAAGACAGAGAGCATTGTTTGAAGCAACAAAATGAAATGGAAATACTTAAAGAA
CAGCTGGCCAAGAAAGATGGTAGCCTCCAACAGTGGCGAGAAGAACGAGATCAACTGGTT
GCAGCTTTAGAAATACAGCTGAAAACACTGATCTCTAGTAACGCACAGAAAGATAATGAA
ATTGAGCAACTAAAAAAGATCACATCAGAGGCTTCTAAAACAGAAAAACAAACCATGGAT
GTCCAGCCCAGACCTATGAGTTCAGTGGATCCTGGCAAGGTTGAAACTGAACCTCAATCA
ACAAGTTTGGAAATTTCCAGGAATGAAGTAGAGGATGGATCTGTAGTCCTTGACTCTTGT
GAAGTGTCAACAGAAAATAACCGAACTAGTCGATTTCCAAAGCCTGAGTTAGAGATTCAG
TTTACACCTTTACAGCCAAACAAAATGGCCGTGAAACACCCGGGTTGTACCACACCCGTG
ACGGTTAAGATTCCCAAGGCCCGGAAGAGGAAGAGTAATGAGATGGAGGAGGACTTTGTG
AAATTTGAAAATAAGAAGAATGCGACACCCAGAACTAATTTGAAGTCCCCTATTTCTGAG
CATGTAAATTCTTCTGTCAAAAAAGAGCAAAAGGTTTCCACTCGCCCATCATCTAAGAAA
ACGTACTCCTTACGGAGTCAGGCATCCACAATCAGTATAAATGTGCCCACTAAGAAAAAA
GAAGGAGCGCTACAGAAATTGGGAGACTTCTTACAACATTCTCCAACTATTCTTCAATCA
AAAGCAAAGAAGATAATGGAAACAATGAGCTCTTCAAAGCTCTCAAATGTAGAAGTAAGT
AAAGAAACTGTGTCTCGACCAAAACGAGCCAAACGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|292329|gb|AAC37542.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|292329|gb|AAC37542.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-875, gnl|bosTau2|chr21 (32329428-32328557)
               

               
               1-875, gnl|Hg17|chr10 (91504366-91522516)
               

               
               1-875, gnl|Mm7|chr19 (34660831-34675822)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-875, gnl|bosTau2|chr21 (32329428-32328557)
               

               
               1-875, gnl|Hg17|chr10 (91504366-91522516)
               

               
               1-875, gnl|Mm7|chr19 (34660831-34675822)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.29274)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)

	1-875, gnl\|bosTau2\|chr21 (32329428-32328557)
	1-875, gnl\|Hg17\|chr10 (91504366-91522516)
	1-875, gnl\|Mm7\|chr19 (34660831-34675822)

	cte (0.29274)
	sug (0.254582)
	tes (0.207814)
	lin (0.145603)
	lnt (0.142308)
	ret (0.128733)