Non-Coding RNA Search

Ss1.1-rret01_k6.5

Sequence:


               
               ATTGACAACAAGCGTTTTCCAAATAAACCTATTATATACATACTCGTGGAATGCCACAAG
ATGAGTCATATGTACATGAAATTCCACCCCTGTACAGCTATTCCACTGCTAAAGGTCACA
TACTGCTTAATGCTGCTTCTGAGTCATGTTCTAATGTTAGACTGACAGGTCTTCAATTGT
CATTTTTTTCTGCAAATCTCTTTTCCATTTTTTAATTAAATGCATGTTGTAGAAAAATAA
TCTTTTAAATGAAAATTTCAGATTCTGTTTGAGCAGCTTCTGTAGATATTTCAGTCCATA
TGAAATAATCCATCTTTACTAAGTTTATACAAGAGGAAGGAAAGTTAAGGATTTTTGAGC
CTTACTAAACGAACAGTATCTTATTTCACTTTACATAAATGTGGATTAATAACGACAAAA
ATCTCATAGTGCTCGTTCCTAAGAATGACGAATTGTCATCAACCTTATCAACTTCAGTGT
CCAATTTTACAATAATTCAGAGCCCTGTGGCTTTTCAAAACTATTAATTACATATTCTAA
GTGTAAGTGCACATGAAAACTGAAAAAAAAAATCCTCTTGTAATTAAGTTTATGAAGGAA
AAACAACAACAACAAAGCCTCCAATAGGTTCAACATTTTGATGCCTTCTGTAAAATTCCC
CTCATAATCTTTCAAGGAGCCATTTCTTTTATGGAACATAAGCCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGACAACAAGCGTTTTCCAAATAAACCTATTATATACATACTCGTGGAATGCCACAAG
ATGAGTCATATGTACATGAAATTCCACCCCTGTACAGCTATTCCACTGCTAAAGGTCACA
TACTGCTTAATGCTGCTTCTGAGTCATGTTCTAATGTTAGACTGACAGGTCTTCAATTGT
CATTTTTTTCTGCAAATCTCTTTTCCATTTTTTAATTAAATGCATGTTGTAGAAAAATAA
TCTTTTAAATGAAAATTTCAGATTCTGTTTGAGCAGCTTCTGTAGATATTTCAGTCCATA
TGAAATAATCCATCTTTACTAAGTTTATACAAGAGGAAGGAAAGTTAAGGATTTTTGAGC
CTTACTAAACGAACAGTATCTTATTTCACTTTACATAAATGTGGATTAATAACGACAAAA
ATCTCATAGTGCTCGTTCCTAAGAATGACGAATTGTCATCAACCTTATCAACTTCAGTGT
CCAATTTTACAATAATTCAGAGCCCTGTGGCTTTTCAAAACTATTAATTACATATTCTAA
GTGTAAGTGCACATGAAAACTGAAAAAAAAAATCCTCTTGTAATTAAGTTTATGAAGGAA
AAACAACAACAACAAAGCCTCCAATAGGTTCAACATTTTGATGCCTTCTGTAAAATTCCC
CTCATAATCTTTCAAGGAGCCATTTCTTTTATGGAACATAAGCCTAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-359, gnl|bosTau2|chr2 (25502776-25502426)
               

               
               8-359, gnl|Hg17|chr2 (162666021-162666378)
               

               
               8-359, gnl|Mm7|chr2 (62256070-62256413)
               


               
               398-708, gnl|bosTau2|chr2 (25502424-25502113)
               

               
               398-708, gnl|Hg17|chr2 (162666417-162666725)
               

               
               398-708, gnl|Mm7|chr2 (62256449-62256746)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-359, gnl|bosTau2|chr2 (25502776-25502426)
               

               
               8-359, gnl|Hg17|chr2 (162666021-162666378)
               

               
               8-359, gnl|Mm7|chr2 (62256070-62256413)
               


               
               398-708, gnl|bosTau2|chr2 (25502424-25502113)
               

               
               398-708, gnl|Hg17|chr2 (162666417-162666725)
               

               
               398-708, gnl|Mm7|chr2 (62256449-62256746)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.257467)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               fco (0.157208)

	8-359, gnl\|bosTau2\|chr2 (25502776-25502426)
	8-359, gnl\|Hg17\|chr2 (162666021-162666378)
	8-359, gnl\|Mm7\|chr2 (62256070-62256413)

	398-708, gnl\|bosTau2\|chr2 (25502424-25502113)
	398-708, gnl\|Hg17\|chr2 (162666417-162666725)
	398-708, gnl\|Mm7\|chr2 (62256449-62256746)