Ss1.1-rret01_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGCCCTCGGGCCACCTGGTGCCCCTGGAGCAAAGGGAGAGAGAGGAGAAAGAGGTGAC CTACAGTCTCAAGCCATGGTGAGAGCAGTGGCACGTCAGGTGTGCGAACAGCTCATCCAA AGTCACATGGCGAGGTACACAGCCATCCTCAACCAGATTCCCAGCCACTCCTCATCAATC CGGACCATCCAAGGGCCTCCTGGGGAGCCTGGGAGACCGGGCTCGCCTGGAGCCCCTGGC GAACAAGGACCACCAGGTAGCCCAGGCTTCCCAGGAAATGCAGGTGTGCCAGGGACCCCA GGAGAACGAGGTTTAACTGGTGTGAAGGGAGAAAAAGGAAATCCAGGCATTGGAACTCAA GGTCCAAGAGGCCCCCCTGGGCCAGCAGGACCTTCTGGGGAGAGTCGGCCAGGAAGCCCT GGACCCCCTGGCTCTCCTGGACCAAGGGGTCCACCGGGTCACTTGGGAGTGCCTGGACCA CAAGGTCCTTCTGGCCAGCCTGGATACTGCGACCCCTCTTCATGTTCAGCCTACGGCGTG GGAGCTACCCATCCTGATCAGCCAGAATTCACCCCGGTCCAAGATGAGCTGGAAGCCATG GAACTGTGGGGCTCTGGGATCTGATGGTCTCGGGAGAATTTGGAAGACCAACCGCAAAAG CTCTTAAAGCGACTTAATCAAGAAGAATGTCATTATGTGGTTTGTATGCTACCTTTGGGG GGGCTCGTTTCATCAGCCTACGTCTCCTGGGATATTGGTAATAGTATTGTTATTATCGAC CAGAAATTAAGAAAAATCCCCTTCATCCATGACGCCATCGAGTTGATTTCTCCTTATTGT TCTAACGGCATGCTGAAAGGAAAATCGGCCAAAAAGTTTGAACTCTGGCATCTTTTCTGT GTCAGATGATTTCAAGTACTAAAATGCAGCAAGATGGATATGATGGTATTTGAAGGAAAT GAGATCCCAGCAGAACAGGAATTCAAAGGGTTGAAGACTATGCTGTGTATCCCTTAGCTC CGCTAGGAATGACCTTGCTGAAAAGAAAAATAAAAGGACAGGATTGGAGAAACTACCTCT TGCTTCATTGATCTAATTCTGAGATCACTTAGTAACTAGCTTCACTGGTAGCCAAGAATA TGTGTCAGAATATAACCTTTCTGAATTTGGTGATTGTAAAAAGAGATCTAGTTTCTCAGT AGCTTTTGAAATGTAAAATAGTGACTTTCCACTGATTCTGAAGTAAAGAGATCCGATTTT GATGAACAGTTTGTCCAGCGGTATGTTCCAGGGCTTGTCCTCCTTAACCACATGGATTAC TTTGTATATTCAGATATGTTTTGGCTAATCTATTTCCAATCTTTTGAAGAAGCAAATAAA AATTTTAAAACAACAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGCCCTCGGGCCACCTGGTGCCCCTGGAGCAAAGGGAGAGAGAGGAGAAAGAGGTGAC CTACAGTCTCAAGCCATGGTGAGAGCAGTGGCACGTCAGGTGTGCGAACAGCTCATCCAA AGTCACATGGCGAGGTACACAGCCATCCTCAACCAGATTCCCAGCCACTCCTCATCAATC CGGACCATCCAAGGGCCTCCTGGGGAGCCTGGGAGACCGGGCTCGCCTGGAGCCCCTGGC GAACAAGGACCACCAGGTAGCCCAGGCTTCCCAGGAAATGCAGGTGTGCCAGGGACCCCA GGAGAACGAGGTTTAACTGGTGTGAAGGGAGAAAAAGGAAATCCAGGCATTGGAACTCAA GGTCCAAGAGGCCCCCCTGGGCCAGCAGGACCTTCTGGGGAGAGTCGGCCAGGAAGCCCT GGACCCCCTGGCTCTCCTGGACCAAGGGGTCCACCGGGTCACTTGGGAGTGCCTGGACCA CAAGGTCCTTCTGGCCAGCCTGGATACTGCGACCCCTCTTCATGTTCAGCCTACGGCGTG GGAGCTACCCATCCTGATCAGCCAGAATTCACCCCGGTCCAAGATGAGCTGGAAGCCATG GAACTGTGGGGCTCTGGGATCTGATGGTCTCGGGAGAATTTGGAAGACCAACCGCAAAAG CTCTTAAAGCGACTTAATCAAGAAGAATGTCATTATGTGGTTTGTATGCTACCTTTGGGG GGGCTCGTTTCATCAGCCTACGTCTCCTGGGATATTGGTAATAGTATTGTTATTATCGAC CAGAAATTAAGAAAAATCCCCTTCATCCATGACGCCATCGAGTTGATTTCTCCTTATTGT TCTAACGGCATGCTGAAAGGAAAATCGGCCAAAAAGTTTGAACTCTGGCATCTTTTCTGT GTCAGATGATTTCAAGTACTAAAATGCAGCAAGATGGATATGATGGTATTTGAAGGAAAT GAGATCCCAGCAGAACAGGAATTCAAAGGGTTGAAGACTATGCTGTGTATCCCTTAGCTC CGCTAGGAATGACCTTGCTGAAAAGAAAAATAAAAGGACAGGATTGGAGAAACTACCTCT TGCTTCATTGATCTAATTCTGAGATCACTTAGTAACTAGCTTCACTGGTAGCCAAGAATA TGTGTCAGAATATAACCTTTCTGAATTTGGTGATTGTAAAAAGAGATCTAGTTTCTCAGT AGCTTTTGAAATGTAAAATAGTGACTTTCCACTGATTCTGAAGTAAAGAGATCCGATTTT GATGAACAGTTTGTCCAGCGGTATGTTCCAGGGCTTGTCCTCCTTAACCACATGGATTAC TTTGTATATTCAGATATGTTTTGGCTAATCTATTTCCAATCTTTTGAAGAAGCAAATAAA AATTTTAAAACAACAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 122-312, - strand, RNAz p=0.997358 | |
| 125-312, - strand, RNAz p=0.936678 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 122-312, - strand, RNAz p=0.997358 | |
| 125-312, - strand, RNAz p=0.936678 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 122-312, gnl|bosTau2|chr14 (50467895-50468084) | |
| 122-312, gnl|canFam2|chr13 (22258846-22259072) | |
| 122-312, gnl|danRer3|chr15 (23943561-23943339) | |
| 122-312, gnl|dasNov1|scaffold_524 (75591-75817) | |
| 122-312, gnl|echTel1|scaffold_323275 (48531-48304) | |
| 122-312, gnl|fr1|chrUn (152231580-152231794) | |
| 122-312, gnl|galGal2|chr2 (146914528-146914309) | |
| 122-312, gnl|hg17|chr8 (121426768-121426994) | |
| 122-312, gnl|Hg17|chr8 (121426795-121426985) | |
| 122-312, gnl|loxAfr1|scaffold_1478 (77340-77567) | |
| 122-312, gnl|mm7|chr15 (55564602-55564817) | |
| 122-312, gnl|Mm7|chr15 (55564618-55564808) | |
| 122-312, gnl|monDom2|scaffold_3 (35331300-35331078) | |
| 122-312, gnl|oryCun1|scaffold_174508 (28507-28281) | |
| 122-312, gnl|panTro1|chr7 (124080939-124081165) | |
| 122-312, gnl|rheMac2|chr4 (71226446-71226229) | |
| 122-312, gnl|rn3|chr7 (92047272-92047487) | |
| 122-312, gnl|tetNig1|chr8 (5314386-5314177) | |
| 122-312, gnl|xenTro1|scaffold_330 (517307-517110) | |
| 543-928, gnl|bosTau2|chr14 (50496092-50496464) | |
| 543-928, gnl|Hg17|chr8 (121452570-121452987) | |
| 543-928, gnl|Mm7|chr15 (55583170-55583555) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-312, gnl|bosTau2|chr14 (50467895-50468084) | |
| 122-312, gnl|canFam2|chr13 (22258846-22259072) | |
| 122-312, gnl|danRer3|chr15 (23943561-23943339) | |
| 122-312, gnl|dasNov1|scaffold_524 (75591-75817) | |
| 122-312, gnl|echTel1|scaffold_323275 (48531-48304) | |
| 122-312, gnl|fr1|chrUn (152231580-152231794) | |
| 122-312, gnl|galGal2|chr2 (146914528-146914309) | |
| 122-312, gnl|hg17|chr8 (121426768-121426994) | |
| 122-312, gnl|Hg17|chr8 (121426795-121426985) | |
| 122-312, gnl|loxAfr1|scaffold_1478 (77340-77567) | |
| 122-312, gnl|mm7|chr15 (55564602-55564817) | |
| 122-312, gnl|Mm7|chr15 (55564618-55564808) | |
| 122-312, gnl|monDom2|scaffold_3 (35331300-35331078) | |
| 122-312, gnl|oryCun1|scaffold_174508 (28507-28281) | |
| 122-312, gnl|panTro1|chr7 (124080939-124081165) | |
| 122-312, gnl|rheMac2|chr4 (71226446-71226229) | |
| 122-312, gnl|rn3|chr7 (92047272-92047487) | |
| 122-312, gnl|tetNig1|chr8 (5314386-5314177) | |
| 122-312, gnl|xenTro1|scaffold_330 (517307-517110) | |
| 543-928, gnl|bosTau2|chr14 (50496092-50496464) | |
| 543-928, gnl|Hg17|chr8 (121452570-121452987) | |
| 543-928, gnl|Mm7|chr15 (55583170-55583555) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| fat (2.06398) | |
| ski (1.90756) | |
| bla (1.11912) | |
| aor (0.976372) | |
| jca (0.911681) | |
| gul (0.887942) | |
| sug (0.763747) | |
| csk (0.70373) | |
| ret (0.643666) | |
| tra (0.61546) | |
| rec (0.519211) | |
| ova (0.387397) | |
| vin (0.332557) | |
| nca (0.273748) | |
| ese (0.253004) | |
| hea (0.204499) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (2.06398) | |
| ski (1.90756) | |
| bla (1.11912) | |
| aor (0.976372) | |
| jca (0.911681) | |
| gul (0.887942) | |
| sug (0.763747) | |
| csk (0.70373) | |
| ret (0.643666) | |
| tra (0.61546) | |
| rec (0.519211) | |
| ova (0.387397) | |
| vin (0.332557) | |
| nca (0.273748) | |
| ese (0.253004) | |
| hea (0.204499) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |