Non-Coding RNA Search

Ss1.1-rret02_n18.5

Sequence:


               
               ATGGAAGGAGTACGGTAATTTAACCAAAGTTAAAAATAATTTATTACAGTTTTGAAAGGC
TTGTCTTAAAGCATCAAAGGAAAAATTACTGTTTCACCTAGAAAAATACTAAATTCCTAG
GAATGGTAACTGTTTTAGTCATTTATGAAACTGAAAAATGATCATGTAGAAAAAATTGAC
ATGAGCACAAAAAATAAAGATGTACCCTTAGTGTCTGAACTGCCTCCTGTCAAGTGATAC
GACTGATAGGATACTTTATTTAATCAAGATGTTTAAAAATATTTATTTCCTTTATGTGCT
TTCAAAGCAGCTACAGTTTTCCTGGTTAAAGTCTGCTTCAAGGAATAAACTCCTTGAAAA
AACAATTAGCAATGTAAGGAAGAGGAGGGAAGCTGGGGAGTAGGACCTCAGAACAGACAC
CCTACAGGTTGATGTAATTAATAACCTGTGACCTAGACTGATGAAGGGCCATGTCACTAT
TTTCTCAACTTTGTTTAAACTTGGAGCATTGATAAATATACCAATTTTTCAACTTAGTAA
GAGATGCCAGATAGCAAAAGTTTTGCCACTAATTTATACTGTAAATTTAACACAATGAAC
ATGCAAAGAATGTAAAATAAACTTTTATAAATCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAGGAGTACGGTAATTTAACCAAAGTTAAAAATAATTTATTACAGTTTTGAAAGGC
TTGTCTTAAAGCATCAAAGGAAAAATTACTGTTTCACCTAGAAAAATACTAAATTCCTAG
GAATGGTAACTGTTTTAGTCATTTATGAAACTGAAAAATGATCATGTAGAAAAAATTGAC
ATGAGCACAAAAAATAAAGATGTACCCTTAGTGTCTGAACTGCCTCCTGTCAAGTGATAC
GACTGATAGGATACTTTATTTAATCAAGATGTTTAAAAATATTTATTTCCTTTATGTGCT
TTCAAAGCAGCTACAGTTTTCCTGGTTAAAGTCTGCTTCAAGGAATAAACTCCTTGAAAA
AACAATTAGCAATGTAAGGAAGAGGAGGGAAGCTGGGGAGTAGGACCTCAGAACAGACAC
CCTACAGGTTGATGTAATTAATAACCTGTGACCTAGACTGATGAAGGGCCATGTCACTAT
TTTCTCAACTTTGTTTAAACTTGGAGCATTGATAAATATACCAATTTTTCAACTTAGTAA
GAGATGCCAGATAGCAAAAGTTTTGCCACTAATTTATACTGTAAATTTAACACAATGAAC
ATGCAAAGAATGTAAAATAAACTTTTATAAATCAGA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               50-636, gnl|bosTau2|chr21 (20764296-20764908)
               

               
               50-636, gnl|Hg17|chr15 (74014327-74015184)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-636, gnl|bosTau2|chr21 (20764296-20764908)
               

               
               50-636, gnl|Hg17|chr15 (74014327-74015184)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               ova (0.387397)
               

               
               gul (0.355177)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               gul (0.355177)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	50-636, gnl\|bosTau2\|chr21 (20764296-20764908)
	50-636, gnl\|Hg17\|chr15 (74014327-74015184)

	ova (0.387397)
	gul (0.355177)
	lin (0.291206)
	cbe (0.239234)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)