Non-Coding RNA Search

Ss1.1-rret02_p18.5

Sequence:


               
               AGACTTTGAAGGACAGGCCACACATACAGGACCCAAAGGAGTAATAAATGACTGGAGAAA
GTTTAAATTAGAAAGTGAAGACAGCGATTCATTCCCACCTAGCAAGAAGGACATTCTCAG
AAAAATGTCTTCTCCTCAGAGCAGAGATGACAAAGATTCAAAAGAAAGACTGAGCAGGAA
GATGAGCGTTCAAGAATATGAACTAATCCACCAAGACAAAGAAGATGAAAACTGCCTTCG
TAAATACCGTAGACAGTGTATGCAGGATATGCACCAGAAGCTGAGTTTTGGGCCTAGATA
TGGGTTTGTGTATGAGCTGGAATCCGGGGAGCAATTCCTGGAGACCATTGAAAAGGAGCA
GAAAATCACCACAATTGTTGTTCACATTTATGAAGATGGCATTAAGGGGTGTGATGCCCT
AAACAGTAGCTTAACATGCCTTGCAGCTGAATACCCAATGGTCAAGTTTTGTAAAATAAA
AGCTTCTAACACAGGTGCTGGGGACCGTTTTTCCTCAGATGTCCTCCCCACACTGCTCGT
CTACAAAGGTGGGGAACTCATAAGCAATTTTATTAGTGTTGCCGAACAGTTTGCTGAAGA
ATTTTTTACTGGGGATGTGGAGTCATTTCTAAACGAATATGGGTTATTGCCTGAAAAAGA
GATACATGTCATAGAGCAGACCACCATGGAAGAAGATATGGAATGAAGATTCATTATGTC
AGTATCTCAAGTCTCCTGTAAGTACTGAGCATTGATTTGGGTAGTATTCATATTTCTTTA
AAGAATACACAGTATACCCATGGCTGTTCTAATTTTTAAAAAATACCAGATTGATACTAA
AACTATATGGTTAGCATTTTTTCAGTATTAGCTACTCAAATTGATATAATACTTTACTAC
AAAACGTAGTCTTCAGAAAAGAGGATATGGATAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTTTGAAGGACAGGCCACACATACAGGACCCAAAGGAGTAATAAATGACTGGAGAAA
GTTTAAATTAGAAAGTGAAGACAGCGATTCATTCCCACCTAGCAAGAAGGACATTCTCAG
AAAAATGTCTTCTCCTCAGAGCAGAGATGACAAAGATTCAAAAGAAAGACTGAGCAGGAA
GATGAGCGTTCAAGAATATGAACTAATCCACCAAGACAAAGAAGATGAAAACTGCCTTCG
TAAATACCGTAGACAGTGTATGCAGGATATGCACCAGAAGCTGAGTTTTGGGCCTAGATA
TGGGTTTGTGTATGAGCTGGAATCCGGGGAGCAATTCCTGGAGACCATTGAAAAGGAGCA
GAAAATCACCACAATTGTTGTTCACATTTATGAAGATGGCATTAAGGGGTGTGATGCCCT
AAACAGTAGCTTAACATGCCTTGCAGCTGAATACCCAATGGTCAAGTTTTGTAAAATAAA
AGCTTCTAACACAGGTGCTGGGGACCGTTTTTCCTCAGATGTCCTCCCCACACTGCTCGT
CTACAAAGGTGGGGAACTCATAAGCAATTTTATTAGTGTTGCCGAACAGTTTGCTGAAGA
ATTTTTTACTGGGGATGTGGAGTCATTTCTAAACGAATATGGGTTATTGCCTGAAAAAGA
GATACATGTCATAGAGCAGACCACCATGGAAGAAGATATGGAATGAAGATTCATTATGTC
AGTATCTCAAGTCTCCTGTAAGTACTGAGCATTGATTTGGGTAGTATTCATATTTCTTTA
AAGAATACACAGTATACCCATGGCTGTTCTAATTTTTAAAAAATACCAGATTGATACTAA
AACTATATGGTTAGCATTTTTTCAGTATTAGCTACTCAAATTGATATAATACTTTACTAC
AAAACGTAGTCTTCAGAAAAGAGGATATGGATAATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61886553|ref|XP_596676.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61886553|ref|XP_596676.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               180-919, gnl|bosTau2|chr16 (48938172-48938926)
               

               
               180-919, gnl|Hg17|chr1 (183145297-183144555)
               

               
               180-919, gnl|Mm7|chr1 (150258587-150259335)
               


               
               210-660, gnl|bosTau2|chr11 (75295723-75295273)
               

               
               210-660, gnl|Hg17|chr9 (122662441-122661991)
               

               
               210-660, gnl|Mm7|chr2 (37359665-37359215)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-919, gnl|bosTau2|chr16 (48938172-48938926)
               

               
               180-919, gnl|Hg17|chr1 (183145297-183144555)
               

               
               180-919, gnl|Mm7|chr1 (150258587-150259335)
               


               
               210-660, gnl|bosTau2|chr11 (75295723-75295273)
               

               
               210-660, gnl|Hg17|chr9 (122662441-122661991)
               

               
               210-660, gnl|Mm7|chr2 (37359665-37359215)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (2.96087)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (2.96087)

	180-919, gnl\|bosTau2\|chr16 (48938172-48938926)
	180-919, gnl\|Hg17\|chr1 (183145297-183144555)
	180-919, gnl\|Mm7\|chr1 (150258587-150259335)

	210-660, gnl\|bosTau2\|chr11 (75295723-75295273)
	210-660, gnl\|Hg17\|chr9 (122662441-122661991)
	210-660, gnl\|Mm7\|chr2 (37359665-37359215)