Ss1.1-rret03_a21.5
|
GTGCCAGAGTGCAGGACAGACCAGACCAGACCCGGGAGGCCGGGCAGGGCCGTGTCTCTG
GGACAGAGGGGGCAAGGTCACGCAAAACCGGACACAGACTTCTTCTCTGGCTTTCCATGT
CAGCATGAACAGTAACCGAGGTCCTGGGCAACTGCATATCAGCTTATTAGAATTCATGGG
ACGTTATTTCTTATGTGAAATTCTAAAGAATTAAAGGATGAATTTGGACAGTGATGGAAT
GGATGACATCATCAGTCAAGAATCCCCATTGGATATGGAGGGGAATTATAAAAAGGCACA
GAAAAATGAGAGAGAATCTATCCGACAGAAGTTGGCACTTGGAAGCTTCTTTGATGATGG
CCCAGGAATTTATACCAGCTGTAGCAAAAGTGGGAAGCCAAGTCTTTCCTCCCGCCTGCA
GAGTGGGATGAACCTGCAGATATGCTTTGTCAATGACAGCGGCAGCGATAAGGACAGTGA
TGCTGATGACAGCAAGACGGAAACCAGTTTGGACACCCCCCTGTCTCCCATGAGCAAACA
GAGTTCTTCCTATTCTGATAGAGACACTACTGAAGAGGAATCTGAATCCCTGGATGACAT
GGATTTCCTCACAAGGCAAAAGAAATTGCAAGCTGAAGCCAAAATGGCCCTGGCCATGGC
CAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGT
CGCTGATCTCCTGCCACACATGCCTCATATAAGTGAATGCTTGATGAAAAGAAGTTTAAA
GCCCACTGACCTGAGAGACATGACTATTGGGCAGCTACAAGTGATAGTCAATGATCTCCA
TTCCCAGATAGAAAGCTTGAATGAAGAGTTGGTCCAGCTGCTCCTCATCCGGGATGAGCT
GCACACGGAGCAAGACGCCATGCTGGTGGACATCGAAGACTTAACCAGACATGCCGAGAG
TCAGCAGAAGCACATGGCAGAGAAAATGCCTGCAAAGTGAAAAGAAGCCATCCAACCAGA
GGACAAGCTAGAATTTCTTTTGCTTCTGTGGTTGTAAAAGTGCTGTTGCTAAAGGTGGCG
CAGAAACAAACATCAGTGTTAGTCATTGATAATGTCTGAAGCTTAATGTCCAGTGATTGG
CCTTTGCTTCTTAATTTATTTTAATTTTTGTACTGTGCCACTAAATATCAGGCATTTTAA
AAAAATACTGTTACAAACACTGTACAGGACTTACACCATCACAAATCATGGTTAATCAAA
AGAGGGTAGTTTTAACTTTATTTTTATTTGTTTAGAGATTTTGAGTTGGAGCAGTATTTT
ACCATTGACTGCTTTCATTCTTCACTGTAGTTTTAAAGAAGAACTGTAAATGACGGTGCT
ATCCAAGTCAAAAAATACATGCCTGCCTCGTAGTGAAGTTGTAGCTCTCCGTAATATGTA
CATTTGAATCAGTTTTCAACATTTTGTGAATGTTGACTACCTGAAGTTCATTTTTAGATG
TGCTATTAACATTCTGTTGGATTCAGAGGGTTCCTTAAAAGTTTTATGTATAAATATGTA
AAATAAAAATTAAAACTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGCCAGAGTGCAGGACAGACCAGACCAGACCCGGGAGGCCGGGCAGGGCCGTGTCTCTG
GGACAGAGGGGGCAAGGTCACGCAAAACCGGACACAGACTTCTTCTCTGGCTTTCCATGT
CAGCATGAACAGTAACCGAGGTCCTGGGCAACTGCATATCAGCTTATTAGAATTCATGGG
ACGTTATTTCTTATGTGAAATTCTAAAGAATTAAAGGATGAATTTGGACAGTGATGGAAT
GGATGACATCATCAGTCAAGAATCCCCATTGGATATGGAGGGGAATTATAAAAAGGCACA
GAAAAATGAGAGAGAATCTATCCGACAGAAGTTGGCACTTGGAAGCTTCTTTGATGATGG
CCCAGGAATTTATACCAGCTGTAGCAAAAGTGGGAAGCCAAGTCTTTCCTCCCGCCTGCA
GAGTGGGATGAACCTGCAGATATGCTTTGTCAATGACAGCGGCAGCGATAAGGACAGTGA
TGCTGATGACAGCAAGACGGAAACCAGTTTGGACACCCCCCTGTCTCCCATGAGCAAACA
GAGTTCTTCCTATTCTGATAGAGACACTACTGAAGAGGAATCTGAATCCCTGGATGACAT
GGATTTCCTCACAAGGCAAAAGAAATTGCAAGCTGAAGCCAAAATGGCCCTGGCCATGGC
CAAACCAATGGCCAAAATGCAAGTAGAAGTGGAAAAACAGAACAGGAAAAAGTCTCCCGT
CGCTGATCTCCTGCCACACATGCCTCATATAAGTGAATGCTTGATGAAAAGAAGTTTAAA
GCCCACTGACCTGAGAGACATGACTATTGGGCAGCTACAAGTGATAGTCAATGATCTCCA
TTCCCAGATAGAAAGCTTGAATGAAGAGTTGGTCCAGCTGCTCCTCATCCGGGATGAGCT
GCACACGGAGCAAGACGCCATGCTGGTGGACATCGAAGACTTAACCAGACATGCCGAGAG
TCAGCAGAAGCACATGGCAGAGAAAATGCCTGCAAAGTGAAAAGAAGCCATCCAACCAGA
GGACAAGCTAGAATTTCTTTTGCTTCTGTGGTTGTAAAAGTGCTGTTGCTAAAGGTGGCG
CAGAAACAAACATCAGTGTTAGTCATTGATAATGTCTGAAGCTTAATGTCCAGTGATTGG
CCTTTGCTTCTTAATTTATTTTAATTTTTGTACTGTGCCACTAAATATCAGGCATTTTAA
AAAAATACTGTTACAAACACTGTACAGGACTTACACCATCACAAATCATGGTTAATCAAA
AGAGGGTAGTTTTAACTTTATTTTTATTTGTTTAGAGATTTTGAGTTGGAGCAGTATTTT
ACCATTGACTGCTTTCATTCTTCACTGTAGTTTTAAAGAAGAACTGTAAATGACGGTGCT
ATCCAAGTCAAAAAATACATGCCTGCCTCGTAGTGAAGTTGTAGCTCTCCGTAATATGTA
CATTTGAATCAGTTTTCAACATTTTGTGAATGTTGACTACCTGAAGTTCATTTTTAGATG
TGCTATTAACATTCTGTTGGATTCAGAGGGTTCCTTAAAAGTTTTATGTATAAATATGTA
AAATAAAAATTAAAACTTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAA
|
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183-296, + strand, RNAz p=0.52553 |
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183-296, - strand, RNAz p=0.52553 |
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183-296, + strand, RNAz p=0.615789 |
|
183-296, - strand, RNAz p=0.615789 |
|
571-730, - strand, RNAz p=0.986809 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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183-296, + strand, RNAz p=0.52553 |
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183-296, - strand, RNAz p=0.52553 |
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183-296, + strand, RNAz p=0.615789 |
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183-296, - strand, RNAz p=0.615789 |
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571-730, - strand, RNAz p=0.986809 |
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24-296, gnl|bosTau2|chr1 (70266755-70266482) |
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24-296, gnl|canFam2|chr34 (29009695-29010106) |
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24-296, gnl|dasNov1|scaffold_658 (91042-91429) |
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24-296, gnl|echTel1|scaffold_267794 (1005-1408) |
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24-296, gnl|hg17|chr3 (161053516-161053923) |
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24-296, gnl|Hg17|chr3 (161053677-161053949) |
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24-296, gnl|mm7|chr3 (68685008-68685405) |
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24-296, gnl|Mm7|chr3 (68685169-68685431) |
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24-296, gnl|monDom2|scaffold_176 (239359-238939) |
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24-296, gnl|panTro1|chr2 (164226942-164227349) |
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24-296, gnl|rheMac2|chr2 (127867816-127867410) |
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24-296, gnl|rn3|chr2 (158529262-158529655) |
| |
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532-730, gnl|bosTau2|chr1 (70225853-70225655) |
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532-730, gnl|Hg17|chr3 (161088198-161088396) |
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532-730, gnl|Mm7|chr3 (68718616-68718814) |
| |
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731-855, gnl|bosTau2|chr1 (70224737-70224613) |
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731-855, gnl|Hg17|chr3 (161089311-161089435) |
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731-855, gnl|Mm7|chr3 (68719602-68719726) |
| |
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946-1585, gnl|bosTau2|chr1 (70217229-70216590) |
|
946-1585, gnl|Hg17|chr3 (161097211-161097850) |
|
946-1585, gnl|Mm7|chr3 (68726810-68727465) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
24-296, gnl|bosTau2|chr1 (70266755-70266482) |
|
24-296, gnl|canFam2|chr34 (29009695-29010106) |
|
24-296, gnl|dasNov1|scaffold_658 (91042-91429) |
|
24-296, gnl|echTel1|scaffold_267794 (1005-1408) |
|
24-296, gnl|hg17|chr3 (161053516-161053923) |
|
24-296, gnl|Hg17|chr3 (161053677-161053949) |
|
24-296, gnl|mm7|chr3 (68685008-68685405) |
|
24-296, gnl|Mm7|chr3 (68685169-68685431) |
|
24-296, gnl|monDom2|scaffold_176 (239359-238939) |
|
24-296, gnl|panTro1|chr2 (164226942-164227349) |
|
24-296, gnl|rheMac2|chr2 (127867816-127867410) |
|
24-296, gnl|rn3|chr2 (158529262-158529655) |
| |
|
532-730, gnl|bosTau2|chr1 (70225853-70225655) |
|
532-730, gnl|Hg17|chr3 (161088198-161088396) |
|
532-730, gnl|Mm7|chr3 (68718616-68718814) |
| |
|
731-855, gnl|bosTau2|chr1 (70224737-70224613) |
|
731-855, gnl|Hg17|chr3 (161089311-161089435) |
|
731-855, gnl|Mm7|chr3 (68719602-68719726) |
| |
|
946-1585, gnl|bosTau2|chr1 (70217229-70216590) |
|
946-1585, gnl|Hg17|chr3 (161097211-161097850) |
|
946-1585, gnl|Mm7|chr3 (68726810-68727465) |
|
aor (1.17165) |
|
fco (1.10046) |
|
ldo (0.582016) |
|
ste (0.540833) |
|
bla (0.497389) |
|
tbr (0.462535) |
|
isp (0.451128) |
|
tes (0.415628) |
|
hea (0.408998) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ssp (0.271039) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
spc (0.226732) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
che (0.136314) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ret (0.128733) |
|
aor (1.17165) |
|
fco (1.10046) |
|
ldo (0.582016) |
|
ste (0.540833) |
|
bla (0.497389) |
|
tbr (0.462535) |
|
isp (0.451128) |
|
tes (0.415628) |
|
hea (0.408998) |
|
tra (0.369276) |
|
gul (0.355177) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ssp (0.271039) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
spc (0.226732) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
che (0.136314) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ret (0.128733) |
