Non-Coding RNA Search

Ss1.1-rret03_c11.5

Sequence:


               
               GTGAAGCGGCTTAACATTTGTTAAAATGAAGTTAGTCAAATAAATTACCCACTAGGATAT
AGCCAAAGTCACTAAAGGTTTAATAGTTGAGTCTTTGTATTTTTATTTTCTCCTTACATT
TCAAAGCAGTGTAGAGTTATACATCAGAGTAAATGTGTAACCTGTGACCTGAGTCTGTCC
TTGGTAGGAAGAGACCTTTAAAACAAGTTGCTAAGGATTTTGATTCCACATATAGGCATT
CCAGATCCTTCTCATGAGTTTAAATGCTAGTACAGTCTCCACAACTTGAATGGCATTGGT
CATTCTATAATTCTTGTCAAAATCATCACTAGCTATGGATTATGAGGGCTCCTTTTGCAT
TCCCAAGAAGAACTGATAACTTTAAAGAAAATGTTGTTTGTCTTTATGTGTGTTGAAGGA
TATTGTCTTTAAATTGTTTCTTCTTGATGTTCCCCACAATGGAAAAATTATCAAATCTAC
CTTATGGATGGCAGCTTGGAGCCTAGCAAGAAGTTGGAGGGTTTGAATTCTATTCCCAAT
TCTGACTGTGTTTTGTTTCTTAACACTGATTACTGTTAGAGAGTTTGAAAGCTGGTTTTG
ATGTGAATAGCAAATTAGAAAATTCTGGTATATTGTGACTAAGGCTTAATAATGCCTATC
TTAAGTGAGGAATGTTATATTAATGAACAGTGCCAAATACACTGTGCACATCTACAATTT
AATCTTTGAATGTGTGTTAGTTGATTAGCTCCCTCCTCCTTTTACGTGAGGGTACTGTGC
ATAGAGTCAGTCAGATCCTTGTGATGTTTTGTATGGCTGTAGACTTTGGCAACATGTAAA
TAATGTGTAAAGCAAGTTTTTATGATTAAGGAATCAAATTTATTGAATTTTATTATTGAA
AGTTGAAACAACATGTATGAACAAAAACAATAAAAGAATATACTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGCGGCTTAACATTTGTTAAAATGAAGTTAGTCAAATAAATTACCCACTAGGATAT
AGCCAAAGTCACTAAAGGTTTAATAGTTGAGTCTTTGTATTTTTATTTTCTCCTTACATT
TCAAAGCAGTGTAGAGTTATACATCAGAGTAAATGTGTAACCTGTGACCTGAGTCTGTCC
TTGGTAGGAAGAGACCTTTAAAACAAGTTGCTAAGGATTTTGATTCCACATATAGGCATT
CCAGATCCTTCTCATGAGTTTAAATGCTAGTACAGTCTCCACAACTTGAATGGCATTGGT
CATTCTATAATTCTTGTCAAAATCATCACTAGCTATGGATTATGAGGGCTCCTTTTGCAT
TCCCAAGAAGAACTGATAACTTTAAAGAAAATGTTGTTTGTCTTTATGTGTGTTGAAGGA
TATTGTCTTTAAATTGTTTCTTCTTGATGTTCCCCACAATGGAAAAATTATCAAATCTAC
CTTATGGATGGCAGCTTGGAGCCTAGCAAGAAGTTGGAGGGTTTGAATTCTATTCCCAAT
TCTGACTGTGTTTTGTTTCTTAACACTGATTACTGTTAGAGAGTTTGAAAGCTGGTTTTG
ATGTGAATAGCAAATTAGAAAATTCTGGTATATTGTGACTAAGGCTTAATAATGCCTATC
TTAAGTGAGGAATGTTATATTAATGAACAGTGCCAAATACACTGTGCACATCTACAATTT
AATCTTTGAATGTGTGTTAGTTGATTAGCTCCCTCCTCCTTTTACGTGAGGGTACTGTGC
ATAGAGTCAGTCAGATCCTTGTGATGTTTTGTATGGCTGTAGACTTTGGCAACATGTAAA
TAATGTGTAAAGCAAGTTTTTATGATTAAGGAATCAAATTTATTGAATTTTATTATTGAA
AGTTGAAACAACATGTATGAACAAAAACAATAAAAGAATATACTCTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               18-823, gnl|bosTau2|chr25 (9505223-9506057)
               

               
               18-823, gnl|Mm7|chr10 (52255406-52256100)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-823, gnl|bosTau2|chr25 (9505223-9506057)
               

               
               18-823, gnl|Mm7|chr10 (52255406-52256100)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               spc (0.340097)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	18-823, gnl\|bosTau2\|chr25 (9505223-9506057)
	18-823, gnl\|Mm7\|chr10 (52255406-52256100)

	spc (0.340097)
	liv (0.292569)
	lin (0.291206)
	hyp (0.285673)
	ret (0.257467)
	aor (0.195274)
	mgm (0.180343)
	sin (0.174948)
	fco (0.157208)
	ski (0.146735)
	lyg (0.133103)
	ova (0.129132)
	tra (0.123092)